CX300627 | Citrus Genome Database

Overview


Name	CX300627
Unique Name	CX300627
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	263

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2A_RAT (Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2A_MOUSE (Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2A_HUMAN (Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 2.823e-11
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHR LK+              Y AA+LEYLTAE+LELAGN
Sbjct:   16 SRSSRAGLQFPVGRVHRFLKK-GNYGNRVGAGAPVYLAAVLEYLTAEILELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 2.823e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 3.646e-11
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +SRSS+AGLQFPVGRVHRLLK+              Y AA+LEYL AE+LELAGN
Sbjct:   21 MSRSSKAGLQFPVGRVHRLLKK-GNYAQRVGAGAPVYMAAVLEYLAAEILELAGN 74

HSP 2 Score: 24.2534 bits (51), Expect = 3.646e-11
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD + +RI PRHL
Sbjct:   73 GNAARDNKKQRIVPRHL 89

The following BLAST results are available for this feature:

BLAST of CX300627 vs. ExPASy Swiss-Prot

BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
H2A2B_MOUSE	2.817e-11	64.81	Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ...	[more]
H2A2B_HUMAN	2.817e-11	64.81	Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ...	[more]
H2A2A_RAT	2.817e-11	64.81	Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2...	[more]
H2A2A_MOUSE	2.817e-11	64.81	Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1...	[more]
H2A2A_HUMAN	2.817e-11	64.81	Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3...	[more]
H2A1_RAT	2.817e-11	64.81	Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2	[more]
H2A1C_RAT	2.817e-11	64.81	Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=...	[more]
H2A1C_HUMAN	2.817e-11	64.81	Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ...	[more]
H2A2_PSAMI	2.823e-11	64.81	Late histone H2A.2.1 OS=Psammechinus miliaris PE=2...	[more]
H2A_AGABI	3.646e-11	61.82	Histone H2A OS=Agaricus bisporus PE=2 SV=3	[more]

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Properties


Property Name	Value
Genbank description	C07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG