CX300627 | Citrus Genome Database

Overview


Name	CX300627
Unique Name	CX300627
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	263

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 4.734e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAHRVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.483 bits (49), Expect = 4.734e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKSRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.140e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.140e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1_HUMAN (Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1_BOVIN (Histone H2A type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

The following BLAST results are available for this feature:

BLAST of CX300627 vs. ExPASy Swiss-Prot

BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
H2AX_XENLA	4.734e-11	62.96	Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3	[more]
H2AX_DANRE	6.140e-11	62.96	Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3	[more]
H2A_ONCMY	6.164e-11	62.96	Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2	[more]
H2A1_XENLA	6.164e-11	62.96	Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2	[more]
H2A1_MOUSE	6.164e-11	62.96	Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE...	[more]
H2A1_HUMAN	6.164e-11	62.96	Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE...	[more]
H2A1_BOVIN	6.164e-11	62.96	Histone H2A type 1 OS=Bos taurus PE=1 SV=2	[more]
H2A1K_MOUSE	6.164e-11	62.96	Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ...	[more]
H2A1J_HUMAN	6.164e-11	62.96	Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ ...	[more]
H2A1H_MOUSE	6.164e-11	62.96	Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ...	[more]

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Properties


Property Name	Value
Genbank description	C07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG