CX300627 | Citrus Genome Database

Overview


Name	CX300627
Unique Name	CX300627
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	263

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1E_RAT (Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.164e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 6.164e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 6.171e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +RSSRAGLQFPVGRVHR LK+              Y AA+LEYLTAE+LELAGN
Sbjct:   16 TRSSRAGLQFPVGRVHRFLKK-GNYGSRVGAGAPVYLAAVLEYLTAEILELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 6.171e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 6.178e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGN
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRK-GNYAKRVGGGAPVYMAAVLEYLTAEILELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 6.178e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 6.186e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGN
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRK-GNYANRVGAGAPVYLAAVLEYLTAEILELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 6.186e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 7.979e-11
Identity = 29/54 (53.70%), Postives = 32/54 (59.26%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            S S++AGLQFP G V R LK               Y  A+LEYLTAEVLELAGN
Sbjct:   25 SHSAKAGLQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGN 78

HSP 2 Score: 31.5722 bits (70), Expect = 7.979e-11
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A++DL+VKRITPRHL
Sbjct:   77 GNAAKDLKVKRITPRHL 93

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 62.003 bits (149), Expect = 7.995e-11
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSS+AGLQFPVGR+HRLLK+              Y AA+LEYL AE+LELAGN
Sbjct:   17 SRSSKAGLQFPVGRIHRLLKK-GNYAQRIGSGAPVYLAAVLEYLAAEILELAGN 69

HSP 2 Score: 23.8682 bits (50), Expect = 7.995e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKSRIVPRHL 84

The following BLAST results are available for this feature:

BLAST of CX300627 vs. ExPASy Swiss-Prot

BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
H2A1H_HUMAN	6.164e-11	62.96	Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH ...	[more]
H2A1F_MOUSE	6.164e-11	62.96	Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ...	[more]
H2A1E_RAT	6.164e-11	62.96	Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=...	[more]
H2A1D_HUMAN	6.164e-11	62.96	Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ...	[more]
H2A1B_HUMAN	6.164e-11	62.96	Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2A...	[more]
H2A1_PSAMI	6.171e-11	62.96	Late histone H2A.1 OS=Psammechinus miliaris PE=2 S...	[more]
H2A_PARLI	6.178e-11	62.96	Histone H2A OS=Paracentrotus lividus PE=3 SV=2	[more]
H2A4_PSAMI	6.186e-11	62.96	Late histone H2A.2.2 OS=Psammechinus miliaris PE=3...	[more]
H2AZ_ASPTN	7.979e-11	53.70	Histone H2A.Z OS=Aspergillus terreus (strain NIH 2...	[more]
H2A_CRYNE	7.995e-11	61.11	Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG