CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2D_HUMAN (Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.048e-14
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRL 349
            E+Y  Y++KVLK+VHPD GI  KAMGIMNSF+NDIFE++A EASRL
Sbjct:   36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRL 81          

HSP 2 Score: 27.335 bits (59), Expect = 2.048e-14
Identity = 15/31 (48.39%), Postives = 17/31 (54.84%), Query Frame = 3
Query:  348 LARYNKKPTITSSGNSDRCETCTFLVSWLST 440
            LA YNK+ TITS  +   C  C    SW ST
Sbjct:   81 LAHYNKRSTITSRRSRRPC-ACCCPASWPST 110          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_RAT (Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E  RL     +       + +    L  PGELAKHAV
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGE-RRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 111          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_EUPCR (Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ET+  YI++VLKQVHP+ G+S K+M IMNSFINDIFEK+A EAS+L +   +       + +    L  PGELAKHAV
Sbjct:   24 ETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYN-KKHTLSSREVQTAVRLLLPGELAKHAV 100          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_PHANO (Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFI--NDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+    IFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   47 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVTTTHIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 125          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            + Y+ Y++KV+KQVHPD+GI+SKAM ++N F+ D+FE++AQEA+RL     +       +      L  PGEL++HAV
Sbjct:  149 DEYRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYT-KRRTLSSREIEAAVRLVLPGELSRHAV 225          
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B2D_HUMAN2.048e-1471.74Putative histone H2B type 2-D OS=Homo sapiens GN=H... [more]
H2B1_RAT2.525e-1456.41Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2B_EUPCR3.297e-1453.85Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1[more]
H2B_PHANO1.809e-1251.25Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 ... [more]
H2B2_ARATH2.363e-1244.87Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170... [more]

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Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
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