CX305142

Overview
NameCX305142
Unique NameCX305142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.731e-39
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = -2
Query:   32 WNLNA--ASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQFVNCGD 340
            W+L A   SAYC+TWDA+KPL+WR KYGWTAFCGP G  GQA+CGKCL+VTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQFV+C D
Sbjct:   41 WDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.914e-38
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = -2
Query:   32 KPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 292
            KP +WR KYGWTAFCGPVGPRG+ +CGKCLRVTN GTGA   VRIVDQCSNGGLDLDVGVF ++DTDG+G  QGHL+VNYQFV+CG+
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = -2
Query:  161 WNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVR 340
            W+L A SAYCSTWDA+KP +WR  YGWTAFCGP GPR       CLR     T A  TVR
Sbjct:   46 WDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGPR-------CLR-----TNAAVTVR 91          
The following BLAST results are available for this feature:
BLAST of CX305142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
WHW1_WHEAT1.731e-3970.75Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
WIN_SOYBN1.914e-3878.16Wound-induced protein (Fragment) OS=Glycine max GN... [more]
CHAL_BRARA1.057e-1260.00Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionC18001F07Rv Drought1 Citrus clementina cDNA clone C18001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305142 ID=CX305142; Name=CX305142; organism=Citrus clementina; type=EST; length=353bp
TTTTTTTTTTTTTTTTTTTTTTTGGGGTTCAATCTCCGCAGTTAACAAAC
TGGTAATTCACCATGAGGTGACCTTGAGCATTGCCTTTTCCATCAGTATC
CAGCTTTCGGAAAACACCGACATCCAAATCTAGACCGCCATTGCTGCACT
GATCAACAATTCTTACCGTTGCTTGAGCTCCTGTCCCTCTATTAGTCACC
CTTAAGCACTTGCCACAAGCAGCTTGTCCACGAGGTCCAACAGGGCCACA
GAAGGCAGTCCATCCATACTTCCGACGCCAAGCCAAGGGCTTGTTTGCAT
CCCAAGTTGAGCAATAAGCACTTGCAGCATTCAAGTTCCATCCAATTCTT
TCA
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