CX305174

Overview
NameCX305174
Unique NameCX305174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.088e-20
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            VKVE+E+  +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:   73 VKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.203e-19
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            +KVEVEE R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   92 IKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.499e-19
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            +K+EVEE R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:  100 IKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.570e-19
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = -2
Query:  328 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 519
            VK+EVEE  +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   96 VKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = -2
Query:  271 KVEVEEGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 516
            KVEVE+G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT           KAI ISG
Sbjct:   66 KVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.066e-16
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            V+VEVEE ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   95 VRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = -2
Query:  328 VKVEVEEGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 519
            ++VEVE+ R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:  101 LRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            V+VEV+EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:   67 VRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = -2
Query:  328 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 519
            +KV++EEG +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   47 IKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            ++V+VE+ R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   80 IRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
The following BLAST results are available for this feature:
BLAST of CX305174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HS178_ARATH1.088e-2070.7717.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP41_SOYBN1.203e-1966.1522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA3.499e-1963.0822.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH4.570e-1964.0622.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS166_ORYSJ1.736e-1861.1816.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ8.066e-1656.9218.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ5.780e-1455.8823.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ2.197e-1355.3817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS157_ARATH8.347e-1352.1715.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP22_MAIZE1.090e-1252.3117.8 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank descriptionC18002B02Rv Drought1 Citrus clementina cDNA clone C18002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305174 ID=CX305174; Name=CX305174; organism=Citrus clementina; type=EST; length=520bp
TTTNTTTTTTTTTTTTTTTTTTTTTATTCGCATTACAAAATATATTTTAT
TGCATCACACTTTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACT
GGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAAC
AGGGGGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGGG
CTTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAA
ACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAGG
TTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCCA
TGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCTC
CTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTT
CTCTTCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCCT
CTTCAACCTCAACTTTTACT
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