CX305174

Overview
NameCX305174
Unique NameCX305174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            +KV+VEE  +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   71 IKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            +KV+VEE R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   78 IKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            ++V+VE+ R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   71 IRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            +KV+VE+  +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   68 IKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            +KV+VE+ R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   78 IKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = -2
Query:  325 VKVEVEEG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            V+VEV+E  R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   97 VRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 29/65 (44.62%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            +KV+VE   +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   76 IKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
The following BLAST results are available for this feature:
BLAST of CX305174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HSP21_SOLPE1.424e-1250.7717.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP18_ORYSJ4.143e-1252.1718.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP23_MAIZE1.574e-1153.8517.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_PEA1.574e-1147.6917.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_MAIZE1.574e-1152.3117.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS219_ORYSJ3.507e-1149.3221.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_HELAN4.580e-1144.6217.9 kDa class II heat shock protein OS=Helianthus... [more]

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Properties
Property NameValue
Genbank descriptionC18002B02Rv Drought1 Citrus clementina cDNA clone C18002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305174 ID=CX305174; Name=CX305174; organism=Citrus clementina; type=EST; length=520bp
TTTNTTTTTTTTTTTTTTTTTTTTTATTCGCATTACAAAATATATTTTAT
TGCATCACACTTTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACT
GGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAAC
AGGGGGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGGG
CTTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAA
ACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAGG
TTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCCA
TGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCTC
CTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTT
CTCTTCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCCT
CTTCAACCTCAACTTTTACT
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