CX305194

Overview
NameCX305194
Unique NameCX305194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.470e-22
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = -3
Query:  212 YDPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L KS +   +++K+HGF
Sbjct:    9 FDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.278e-22
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = -3
Query:  212 DPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 511
            DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L K  +   D++K+HGF
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.551e-19
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = -3
Query:  212 VQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 448
            +QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_MIMIV (Protein translation factor SUI1 homolog OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R464 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  212 YDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVV-NDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            YDPF D  D+    +K  +H++ +QR   K +T ++ + E    +  LK LK  F C+G++  N     K IQL GDHR+ V  FL+K+ IV +  I +HG+
Sbjct:    7 YDPFNDGLDTEQHFEK--IHIKTKQRTKTKSITIIENIPEKIDLKLFLKKLKYTFHCSGSIQQNYDDDSKFIQLSGDHRELVKNFLIKNSIVKESNIVMHGY 106          
The following BLAST results are available for this feature:
BLAST of CX305194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SUI1_ANOGA1.470e-2249.02Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME4.278e-2249.50Protein translation factor SUI1 homolog OS=Drosoph... [more]
EIF1_CHICK7.551e-1951.90Eukaryotic translation initiation factor 1 (Fragme... [more]
SUI1_MIMIV7.568e-1137.25Protein translation factor SUI1 homolog OS=Acantha... [more]

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Properties
Property NameValue
Genbank descriptionC18002D03Rv Drought1 Citrus clementina cDNA clone C18002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305194 ID=CX305194; Name=CX305194; organism=Citrus clementina; type=EST; length=516bp
GACTTTNTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAATATCCATAACTT
TTATTATCATTATCCATAACTTGAGAACAGAAAATCTTAAATCCAAGTCC
AGAGAAATACAGAAAACCTCAACAAGAACAGACTACAGATATGCTCTGCA
GATCACATAAGACCACATATATTATACCATAACCATATGTATTAATCACC
ACATTTGCTTAGAAACCATGAATCTTGATACGATCCTTGTCCACAATCTT
ACTCTTAACGAGAAAGATCATAACATTCTTCCGATGATCACCTTGAAGCT
GAATCACCTTCCCGAGAACTTTGTCATTGACAACATTCCCGTTACAACAG
AACTCCTTTTTGAGGTCCTTGAGGATCTTCTGGTAGCCAAAATCCTCTTT
AAGTCCTTGAACAGTTGTTAAGCACTTCTTTCCATTCCTCTGCTGTACGC
GGAGATGCACGTACCCTTTGTCACCTGGGGCAAGGGAGTCCTTTATATCA
GCAAAGGGATCATAGG
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