CX305588

Overview
NameCX305588
Unique NameCX305588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length337
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEB5 (Cysteine desulfurase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=iscS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E+  + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIEVITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEB2 (Cysteine desulfurase OS=Shewanella baltica (strain OS223) GN=iscS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E+  + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIEVITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_RICBR (Cysteine desulfurase OS=Rickettsia bellii (strain RML369-C) GN=iscS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 51/75 (68.00%), Postives = 68/75 (90.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLR++GVDE++AHTSIRFGIGRFTTE E+D A++L   ++ KLR++SPL+EM++EGID+K+I+WA H
Sbjct:  336 SASLEPSYVLRSMGVDEELAHTSIRFGIGRFTTEQEIDYAVKLICSKINKLRDLSPLWEMMQEGIDLKKIKWATH 410
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_RICB8 (Cysteine desulfurase OS=Rickettsia bellii (strain OSU 85-389) GN=iscS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 51/75 (68.00%), Postives = 68/75 (90.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLR++GVDE++AHTSIRFGIGRFTTE E+D A++L   ++ KLR++SPL+EM++EGID+K+I+WA H
Sbjct:  336 SASLEPSYVLRSMGVDEELAHTSIRFGIGRFTTEQEIDYAVKLICSKINKLRDLSPLWEMMQEGIDLKKIKWATH 410
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_RAT (Cysteine desulfurase, mitochondrial OS=Rattus norvegicus GN=Nfs1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE EVD  ++  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:  377 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVQKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHESW (Cysteine desulfurase OS=Shewanella sp. (strain W3-18-1) GN=iscS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E   + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIETITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHESR (Cysteine desulfurase OS=Shewanella sp. (strain MR-7) GN=iscS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E   + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIETITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHESM (Cysteine desulfurase OS=Shewanella sp. (strain MR-4) GN=iscS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E   + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIETITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHESA (Cysteine desulfurase OS=Shewanella sp. (strain ANA-3) GN=iscS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E   + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIETITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404
[Close]
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEPC (Cysteine desulfurase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=iscS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = -1 
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E   + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIETITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404
The following BLAST results are available for this feature:
BLAST of CX305588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
ISCS_SHEB51.829e-2568.00Cysteine desulfurase OS=Shewanella baltica (strain... [more]
ISCS_SHEB21.829e-2568.00Cysteine desulfurase OS=Shewanella baltica (strain... [more]
ISCS_RICBR2.388e-2568.00Cysteine desulfurase OS=Rickettsia bellii (strain ... [more]
ISCS_RICB82.388e-2568.00Cysteine desulfurase OS=Rickettsia bellii (strain ... [more]
NFS1_RAT3.119e-2569.33Cysteine desulfurase, mitochondrial OS=Rattus norv... [more]
ISCS_SHESW3.119e-2568.00Cysteine desulfurase OS=Shewanella sp. (strain W3-... [more]
ISCS_SHESR3.119e-2568.00Cysteine desulfurase OS=Shewanella sp. (strain MR-... [more]
ISCS_SHESM3.119e-2568.00Cysteine desulfurase OS=Shewanella sp. (strain MR-... [more]
ISCS_SHESA3.119e-2568.00Cysteine desulfurase OS=Shewanella sp. (strain ANA... [more]
ISCS_SHEPC3.119e-2568.00Cysteine desulfurase OS=Shewanella putrefaciens (s... [more]

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Properties
Property NameValue
Genbank descriptionC18007E12Rv Drought1 Citrus clementina cDNA clone C18007E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305588 ID=CX305588; Name=CX305588; organism=Citrus clementina; type=EST; length=337bp
AAGCGCGACGGGAAGAAACCTGGATTAAAACTCAAAGGTGGTTCTCTGCT
CTAACTCACAGGTCTGCCTTTTCACTTGACGCACATACAATTTCACATCA
ACAACCGCCTCAGTGTTGAGCCCATTGTATCTGCTTTATATCAATTCCTT
CTTTCACCATCTCATATAGCGGGCTCATTTCCCTCAACTTCTCAACCTGC
TTCACTGTAAGCTCCATAGCCCTATCAACCTCCGCCTCCGTAGTAAACCT
CCCAATCCCAAACCTAATCGAAGTATGTGCCATATCCTCGTCCACACCTA
ATGCCCTCAGAACATATGATGGCTCCAAACTTGCACT
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