CX305588

Overview
NameCX305588
Unique NameCX305588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length337
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_ENCCU (Cysteine desulfurase, mitosomal OS=Encephalitozoon cuniculi GN=NFS1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = -1
Query:  122 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQW 337
            SASLEPSYVLRALG D+++AH+SIRFGIGRFT   E+D     TV+ V+KLREMSPLYEMVKEGID+ +I W
Sbjct:  359 SASLEPSYVLRALGRDDELAHSSIRFGIGRFTMAKEIDIVANKTVEAVQKLREMSPLYEMVKEGIDLSKISW 430          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEPA (Cysteine desulfurase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=iscS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTT+ E+D A+E   + +  LREMSPL+EM K+GID+  +QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTDEEIDHAIETIKESIGNLREMSPLWEMFKDGIDLDSVQWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEHH (Cysteine desulfurase OS=Shewanella halifaxensis (strain HAW-EB4) GN=iscS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTT+ E+D A+E   + +  LREMSPL+EM K+GID+  +QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTDEEIDHAIETIKESIGNLREMSPLWEMFKDGIDLDSVQWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_VIBHB (Cysteine desulfurase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=iscS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG+D+++AH+S+RF  GRFTTEAE+D A+E     V KLR+MSPL++M KEGID+  ++WA H
Sbjct:  330 SASLEPSYVLRALGLDDELAHSSVRFSFGRFTTEAEIDYAIEQIRVAVTKLRDMSPLWDMYKEGIDLSTVEWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEPW (Cysteine desulfurase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=iscS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTT+ E++ A+E   + +  LREMSPL+EM K+GID+  +QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTDEEIEHAIETITESIGNLREMSPLWEMFKDGIDLDSVQWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_HAEPS (Cysteine desulfurase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=iscS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG+++++AH+SIRF IGR+TTE E+D  +E+  K V KLRE+SPL++M KEGID+  I+W+ H
Sbjct:  332 SASLEPSYVLRALGLNDELAHSSIRFSIGRWTTEEEIDHTIEIVKKAVTKLRELSPLWDMFKEGIDLNSIEWSHH 406          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_PECCP (Cysteine desulfurase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=iscS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG+++++AH+SIRF +GRFTTE E+D  +EL  K + +LR++SPL+EM K+G+DI  I+WA H
Sbjct:  330 SASLEPSYVLRALGMNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMFKQGVDISSIEWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_ERWCT (Cysteine desulfurase OS=Erwinia carotovora subsp. atroseptica GN=iscS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG+++++AH+SIRF +GRFTTE E+D  +EL  K + +LR++SPL+EM K+G+DI  I+WA H
Sbjct:  330 SASLEPSYVLRALGMNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMFKQGVDISSIEWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_SCHPO (Probable cysteine desulfurase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC21D10.11c PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRA+G  ++ AH+SIRFGIGRFTTEAE+D A+E   +QV  LR MSPL+++V+EG+D+  I+W+QH
Sbjct:  424 SASLEPSYVLRAIGQSDENAHSSIRFGIGRFTTEAEIDYAIENVSRQVSFLRNMSPLWDLVQEGVDLSTIEWSQH 498          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_VIBCM (Cysteine desulfurase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=iscS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG+++++AH+SIRF  GRFTTEAE+D A+EL    V+KLR MSPL++M K+G+D+  ++WA H
Sbjct:  330 SASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAEIDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVEWAHH 404          
The following BLAST results are available for this feature:
BLAST of CX305588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
NFS1_ENCCU6.504e-2370.83Cysteine desulfurase, mitosomal OS=Encephalitozoon... [more]
ISCS_SHEPA6.504e-2364.00Cysteine desulfurase OS=Shewanella pealeana (strai... [more]
ISCS_SHEHH6.504e-2364.00Cysteine desulfurase OS=Shewanella halifaxensis (s... [more]
ISCS_VIBHB1.109e-2264.00Cysteine desulfurase OS=Vibrio harveyi (strain ATC... [more]
ISCS_SHEPW1.109e-2262.67Cysteine desulfurase OS=Shewanella piezotolerans (... [more]
ISCS_HAEPS1.109e-2262.67Cysteine desulfurase OS=Haemophilus parasuis serov... [more]
ISCS_PECCP1.449e-2261.33Cysteine desulfurase OS=Pectobacterium carotovorum... [more]
ISCS_ERWCT1.449e-2261.33Cysteine desulfurase OS=Erwinia carotovora subsp. ... [more]
NFS1_SCHPO1.892e-2264.00Probable cysteine desulfurase, mitochondrial OS=Sc... [more]
ISCS_VIBCM1.892e-2262.67Cysteine desulfurase OS=Vibrio cholerae serotype O... [more]

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Properties
Property NameValue
Genbank descriptionC18007E12Rv Drought1 Citrus clementina cDNA clone C18007E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305588 ID=CX305588; Name=CX305588; organism=Citrus clementina; type=EST; length=337bp
AAGCGCGACGGGAAGAAACCTGGATTAAAACTCAAAGGTGGTTCTCTGCT
CTAACTCACAGGTCTGCCTTTTCACTTGACGCACATACAATTTCACATCA
ACAACCGCCTCAGTGTTGAGCCCATTGTATCTGCTTTATATCAATTCCTT
CTTTCACCATCTCATATAGCGGGCTCATTTCCCTCAACTTCTCAACCTGC
TTCACTGTAAGCTCCATAGCCCTATCAACCTCCGCCTCCGTAGTAAACCT
CCCAATCCCAAACCTAATCGAAGTATGTGCCATATCCTCGTCCACACCTA
ATGCCCTCAGAACATATGATGGCTCCAAACTTGCACT
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