CX305594

Overview
NameCX305594
Unique NameCX305594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.226e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = -2
Query:  124 EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGK-----GVPYSIFI 477
            E+   F   PE   L+T PSQ+Q   VMA LD+LS+H+ DEEY+G   EPAW+ D  ++ AF+ F+ K+ ++   ++  N D   RN++GAG+VPY LL+P +   +  K     G+P SI I
Sbjct:  810 EEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.355e-19
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = -2
Query:  124 LEK-PENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 459
            LEK P+   L T  +Q+Q    ++++++LSTHS DE YLG++    W  +     AFEKF  K+ E+E  ID RN D  L+N+ G   +PY LL P SE GVTG+G+P S+ I
Sbjct:  747 LEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIPNSVSI 859          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.019e-19
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = -2
Query:  124 DPFDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSE------PGVTGKGVPYSIFI 489
            +P  E++      PE A ++T  SQIQ    +++L+VLS HS DE YLG++  P W  DP     F++F  +L+E+E  +   N DP+L+N+NG    PY LL P +        G+T KG+P SI I
Sbjct:  735 EPGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTPEWTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.726e-19
Identity = 46/112 (41.07%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  124 LEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 459
            ++ P+ A L T   + +    ++++++LS H+ DE YLG++  P W  D     AF++F  KL  +EG I+ARN+DP LRN+ G   +PY LL   SE G+T KG+P SI I
Sbjct:  753 VKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.784e-19
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  124 DPFDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 489
            +P   +++   + P+ A L T  +Q+Q    ++++++LS H+ DE YLG++  P W +D    AAFE+F  KL ++E  I  RN +  L N+ G    PY LL P SE G+TGKG+P S+ I
Sbjct:  739 EPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 860          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.147e-18
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  124 DPFDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 489
            +P   +++     P+ A L T  +Q+Q    ++++++LS H+ DE YLG++  P W +D    AAF++F  KL ++E  I  RN D  L N++G    PY LL P SE G+TGKG+P S+ I
Sbjct:  740 EPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 861          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.694e-18
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = -2
Query:  124 QWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 474
            +++  ++ P+ A L T   + Q    ++++++LS H+ DE YLG++  P W  D     AF+KF  KL E+E  +  RN D KLRN++G   +PY LL P S+ G+T +G+P SI I
Sbjct:  745 EFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIPNSISI 861          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = -2
Query:  124 DPFDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSE------PGVTGKGVPYSIFI 489
            +P  E +      PE A + T  SQ+Q    +++++VLS HS DE YLG++  PAW  D     AF +F  +L+E+EG +   N D  L+N+NG    PY LL P +        G+T KG+P SI I
Sbjct:  739 EPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  124 EKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 456
            + P+ A L T   + Q    ++++++LS H+ DE YLG++  P W  D     AF++F  KL ++E  +  RN D KLRN+ G   +PY LL P S+ G+T +G+P SI I
Sbjct:  747 KNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  124 QWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLR-NKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 474
            +++  +   E A L T  S++     ++++++LSTH+ DE YLG++  P W  D     AF+KF  KL E+E  +  RN DP L+ N+ G   +PY LL P SE G+T +G+P SI I
Sbjct:  722 EYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839          
The following BLAST results are available for this feature:
BLAST of CX305594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX22_HORVU1.226e-2041.46Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX1_ARATH1.355e-1944.25Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX1_HORVU3.019e-1939.06Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOXX_SOYBN6.726e-1941.07Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXA_SOLLC8.784e-1938.52Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU1.147e-1838.52Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX3_PEA5.694e-1838.46Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_ORYSJ7.436e-1838.28Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX3_SOYBN2.826e-1738.74Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOYBN3.691e-1738.98Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC18007F06Rv Drought1 Citrus clementina cDNA clone C18007F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305594 ID=CX305594; Name=CX305594; organism=Citrus clementina; type=EST; length=490bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACGGCAATTTATTTGATT
CATTCTTGAACTCATTCTCAAAAGTTTTTATTGACACAACATTCGAGCGA
TTGCAACAACATTTTCAACTCTAAATAAAAATGCTGTACGGAACTCCTTT
TCCTGTAACACCAGGTTCCGAAAATGGCTTCAAAAGCTCATATGGCACCA
TCCCAGCTCCATTTTTATTCCTCAACTTGGGATCTGCATTCCTTGCATCA
ATAATCCCTTCAAGCTCCATTAACTTGCCTCTAAACTTTTCAAATGCTGC
ATTTATAACCGGATCCTCACGCCATGCTGGCTCTATTTTTTTTCCTAAAT
ACTCCTCATCAGGAGAATGAGTCGATAAAACATCAAGAATAGCCATAACT
TTAGTAGCTTGAATCTGGGAAGGGAAGGTATTCAAAAGTGCATTTTCAGG
TTTTTCAAGGAAGAATTTCCATTGTTCATCAAATGGATCT
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