CX306013

Overview
NameCX306013
Unique NameCX306013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.168e-18
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  107 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQE---EKNDKWHRVERSSGKF 415
            R  NV DP+S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   + +++WH VERSSGKF
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKF 105          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 2
Query:  101 GGRRTNVFDPVSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            GG      +PVS+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERF 132          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  227 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKF 129          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  221 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKF 137          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.100e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  203 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKF 133          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.581e-13
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  119 VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            +FD ++ D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATF 104          
The following BLAST results are available for this feature:
BLAST of CX306013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HS166_ORYSJ2.168e-1845.2816.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ6.307e-1842.9918.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN1.315e-1555.5622.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.315e-1552.3122.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH2.100e-1347.2222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS17B_ORYSJ3.581e-1340.0017.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionC18013A01Rv Drought1 Citrus clementina cDNA clone C18013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306013 ID=CX306013; Name=CX306013; organism=Citrus clementina; type=EST; length=416bp
GCGGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCA
TTTAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTC
GGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGA
TCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGG
CTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACT
CCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGA
AGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGA
GGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGG
AGCAGTGGCAAGTTCC
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