CX306032

Overview
NameCX306032
Unique NameCX306032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX306032 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.983e-32
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -3 
Query:  149 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 418
            DA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   18 DADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107
[Close]
BLAST of CX306032 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.954e-31
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = -3 
Query:  149 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 418
            DA+KP AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A   VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:  104 DADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193
The following BLAST results are available for this feature:
BLAST of CX306032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4_PRUPE9.983e-3266.67Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
HEVL_ARATH4.954e-3164.44Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionC18013B09Rv Drought1 Citrus clementina cDNA clone C18013B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306032 ID=CX306032; Name=CX306032; organism=Citrus clementina; type=EST; length=420bp
TTTTTTTTTTTTTTTTTTTTGCTTGATACTTCATCAGAAGTTTTATTTTT
ATTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTAACCCTA
TTACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGTGCTTTAAT
CATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGATAG
CCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTAA
GCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGGCTCCTG
TACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAATG
GGTCCGCCCGAATGACAGAAAGCAGTCCAGCCATATTTCTGGCGCCAGGC
CAAGGGCTTGTTGGCATCCC
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