CX306035

Overview
NameCX306035
Unique NameCX306035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.478e-31
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVF+K    SAA MT +SGIRKIL  SEICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  G
Sbjct:  181 EMCMTGLDREKASVFFKEQTGSAAEMTVNSGIRKILRNSEICDFDFEPCGYSMNSVEGSAVSTIHITPEDGFSYASFETAG 261          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.651e-26
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNE----SSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLD+++ASVF+KT+     S A  MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG
Sbjct:  188 EMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVVG 272          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.651e-26
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESS----AAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLD+K+A VF+KTN       A  MT+ SGI +I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E +G
Sbjct:  188 EMCMTGLDKKKACVFFKTNADGNTTCAKEMTKLSGISEIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVMG 272          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNE----SSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLD+++ASVF+KT+     S A  MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG
Sbjct:  188 EMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGLAFSTIHVTPEDGFSYASYEVVG 272          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.826e-25
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNE----SSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLD+ +ASVF+KT+     S A  MT+ SGI  I+P+ E+CDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E  G
Sbjct:  181 EMCMTGLDKTKASVFFKTHADGHVSCAKEMTKLSGISDIIPEMEVCDFDFEPCGYSMNAINGSAFSTIHVTPEDGFSYASYEVQG 265          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSI-EGDAVSTIHVTPEDGFSYASFEAVGNISLRDIQFLL 296
            E+ M  LD +  S+FYK   + A   T  SGI  ILP   I DF FDPCGYSMN I +     TIH+TPE+ FSY SFE   N++L + + L+
Sbjct:  186 EILMQDLDPETMSIFYKNKFNDANGATVKSGIDTILPTMHIDDFLFDPCGYSMNGINDKGEYMTIHITPENQFSYVSFET--NVALSNYRKLI 276          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGNISLRDIQFLL 296
            E+ M  LD      F+K    SA   T +SGI  +LP S I DF+FDPCGYSMN +  +   TIH+TPE   SY SF+   N++L D   LL
Sbjct:  203 EVMMHDLDETVMKQFFKREGVSAWDTTVNSGIADLLPGSMIDDFQFDPCGYSMNGLLNEFYWTIHITPESHCSYVSFDT--NVALADYNQLL 292          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256          
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256          
The following BLAST results are available for this feature:
BLAST of CX306035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DCAM_PEA6.478e-3176.54S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM_ORYSJ1.651e-2667.06S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_MAIZE1.651e-2665.88S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_ORYSI4.804e-2667.06S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_HORCH1.826e-2564.71S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_DROME7.196e-1447.31S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_DICDI4.664e-1345.65S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_HUMAN7.447e-1145.57S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_BOVIN7.447e-1145.57S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]
DCAM_RAT9.726e-1145.57S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionC18013B12Rv Drought1 Citrus clementina cDNA clone C18013B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306035 ID=CX306035; Name=CX306035; organism=Citrus clementina; type=EST; length=574bp
CGCCCGGGCAGGTACGCGGGGAGATGTGCATGACTGGTTTGGACAGAAAG
AGGGCATCTGTCTTCTACAAAACTAATGAAAGCTCAGCCGCTATGATGAC
CGAGGACTCTGGCATCAGAAAGATTCTTCCAAAATCTGAGATTTGTGATT
TTGAGTTTGACCCTTGTGGTTACTCCATGAATAGTATTGAAGGGGATGCA
GTATCTACTATCCACGTCACACCTGAAGATGGTTTCAGTTATGCAAGTTT
TGAGGCCGTGGGTAATATAAGCCTGAGAGATATTCAGTTCCTTTTAACTA
CACCGGAGATCTATCACGATTATAGATCTATCACTGCTAAGAACTTCCTG
ACAGCAGTTCGAAAGTACATGGAAGAACATCATCATGAGGACTCACCATT
GTTAAGTGGCATGGTAACATGCAGCAGAAACCACACAATAAAGGAATTAA
TCCATCTGCTTGATTCCAAAAAAATTCATCGAATTTATGTGGTGGATTTT
AATGGGAATTTGGAAGGTGTGATCACATTGAGAGACATCATCTCAAGGCT
AGTACACGAGCCTCCAGGCTACTT
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