CX306035

Overview
NameCX306035
Unique NameCX306035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
[Close]
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
[Close]
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
[Close]
BLAST of CX306035 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
The following BLAST results are available for this feature:
BLAST of CX306035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DCAM_MESAU9.726e-1145.57S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM2_MUSSP9.726e-1145.57S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE9.726e-1145.57S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_MOUSE9.726e-1145.57S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC18013B12Rv Drought1 Citrus clementina cDNA clone C18013B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306035 ID=CX306035; Name=CX306035; organism=Citrus clementina; type=EST; length=574bp
CGCCCGGGCAGGTACGCGGGGAGATGTGCATGACTGGTTTGGACAGAAAG
AGGGCATCTGTCTTCTACAAAACTAATGAAAGCTCAGCCGCTATGATGAC
CGAGGACTCTGGCATCAGAAAGATTCTTCCAAAATCTGAGATTTGTGATT
TTGAGTTTGACCCTTGTGGTTACTCCATGAATAGTATTGAAGGGGATGCA
GTATCTACTATCCACGTCACACCTGAAGATGGTTTCAGTTATGCAAGTTT
TGAGGCCGTGGGTAATATAAGCCTGAGAGATATTCAGTTCCTTTTAACTA
CACCGGAGATCTATCACGATTATAGATCTATCACTGCTAAGAACTTCCTG
ACAGCAGTTCGAAAGTACATGGAAGAACATCATCATGAGGACTCACCATT
GTTAAGTGGCATGGTAACATGCAGCAGAAACCACACAATAAAGGAATTAA
TCCATCTGCTTGATTCCAAAAAAATTCATCGAATTTATGTGGTGGATTTT
AATGGGAATTTGGAAGGTGTGATCACATTGAGAGACATCATCTCAAGGCT
AGTACACGAGCCTCCAGGCTACTT
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