CX306043

Overview
NameCX306043
Unique NameCX306043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:  156 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            + I WDL  AS FCATWDA+KPL+WR KYGWTAFC   GP GQ +CG C
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKC 49
[Close]
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.761e-13
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 3 
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGP 275
            TYH Y+P Q  WDL A SA+C+TWDA+KP +WR  YGWTAFC   GP
Sbjct:   35 TYHYYNPAQNNWDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGP 79
The following BLAST results are available for this feature:
BLAST of CX306043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4_PRUPE3.484e-1667.35Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
CHAL_BRARA2.761e-1363.83Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18013C08Rv Drought1 Citrus clementina cDNA clone C18013C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306043 ID=CX306043; Name=CX306043; organism=Citrus clementina; type=EST; length=302bp
GCGGGGGTACAACGGATAAGTTAAGCTTACAACATTAAGACAAAAATATG
GGGAGGTTCGGTCTCTGTGTGATTCTGTCAGTTTGTCTACTGGTGGCAGC
TGCTTCTGCCCAAAGTGCTTCTAATGTGATAGCCACGTATCATCTCTACC
ACCCTGAGCAAATTGGATGGGACTTGACTGCAGCGAGCGCTTTCTGCGCA
ACATGGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGAC
TGCTTTCTGTCATTCGGGCGGACCCATTGGACAAGCTGCTTGTGGCACGT
GC
back to top