CX306049

Overview
NameCX306049
Unique NameCX306049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.661e-30
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  218 YCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKV--DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKKHV + S  ++    ++D+LK WDA+F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:   57 YCKKHVVSDSPTEE----SKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 8.179e-29
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = -3
Query:  218 YCKKHVEAGSGD--------KKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE-VRRENQWAFE 517
            YCKKHV+    D        KK D   + +L  WDA+F+K +D  T+F LILAANYLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDF+ +EEEE +R+EN WAFE
Sbjct:   58 YCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.179e-29
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = -3
Query:  218 YCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKKHV        D++S  D+ KTWD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:   58 YCKKHVV-------DEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
The following BLAST results are available for this feature:
BLAST of CX306049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1_PONAB5.123e-3170.00S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE5.123e-3170.00S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA5.123e-3170.00S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN5.123e-3170.00S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK5.123e-3170.00S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO5.123e-3170.00S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN5.123e-3170.00S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK13_ARATH9.661e-3061.76SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK15_ARATH8.179e-2958.18SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH8.179e-2964.36SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionC18013D03Rv Drought1 Citrus clementina cDNA clone C18013D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306049 ID=CX306049; Name=CX306049; organism=Citrus clementina; type=EST; length=519bp
CGAGGAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGCAATAGACAAG
GGTTCAATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAGG
AAATGTTGATGTTCAATACTAGACACCTACTGGCAACATACTAAAAGACC
ACTATCATTATAACGACATTCCTATCACAAATATTAATTACCGAGCCTTC
ATCACTTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCTC
CTCTTCTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGGA
TCTCCTCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGTC
AAGTCCAGCAAACCCTTAATGTTCAGGTAATTGGCGGCCAAGATTAGGTC
AAAGAGGGTATTCTGATCAACCTTGACGAAGTCTGCATCCCAGGTCTTGA
GATCATCCTCGGTCGACTTGTCGTCCTTCTTGTCCCCTGACCCAGCCTCA
ACGTGCTTCTTGCAGTACT
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