CX306049

Overview
NameCX306049
Unique NameCX306049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.108e-28
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = -3
Query:  218 YCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YC KH V+A +        ++DDLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:   59 YCNKHHVDAAN------PCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.436e-27
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  218 YCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YC KH V+A +        +++DLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND++ +EEE VRRENQW FE
Sbjct:   58 YCNKHHVDAAN------PCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 6.480e-26
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = -3
Query:  224 YCKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 517
            + + H ++   D+ DD S +   + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDF+P+EE  +RREN+WA
Sbjct:   93 WAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.444e-25
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  218 YCKKHVEAGSGDKKD---------DKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKKHV     D  D         ++  +++L+TWDA+F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND++P+EE+ +R+EN WAFE
Sbjct:   58 YCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.885e-25
Identity = 55/100 (55.00%), Postives = 74/100 (74.00%), Query Frame = -3
Query:  221 YCKKHVEAGSGDKKDDKSTEDDLKTWDADFV-KVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 517
            Y K HV   S ++ +D+  + +L +WDA F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDF+P+EEEE+R+EN W F
Sbjct:   58 YAKMHVNEPS-EEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.462e-25
Identity = 55/104 (52.88%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  224 YCKKH---VEAGSGDKKD---DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 517
            +C+ H   + +G+ ++ D    KST  D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDF+P+EEE++R+EN+WA
Sbjct:   57 WCEHHKNDLYSGTEEESDIRLKKST--DIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.222e-24
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  218 YCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YC+KHV++           E+DLK WDADF+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND + +E  ++R ENQWAF+
Sbjct:   57 YCEKHVKS---------KEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.644e-24
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  218 YCKKHVE-----------AGSGDKK--------DD----KSTEDD---------LKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKKHVE           +  GDK         DD    +STE D         L  WDA F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDF+P+EEE +R EN W FE
Sbjct:   58 YCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  218 YCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YC KH V+A +        ++DDL+ WD +F++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:   58 YCNKHHVDAAN------PCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.652e-21
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = -3
Query:  221 YCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 517
            YCKKHV        DD   +++  TWDA+FVK +D +TLF L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND++P+EEEE+R++N+WAF
Sbjct:   58 YCKKHV--------DDVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
The following BLAST results are available for this feature:
BLAST of CX306049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ASK9_ARATH3.108e-2858.42SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK10_ARATH3.436e-2759.41SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_YEAST6.480e-2653.54Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK16_ARATH1.444e-2550.00SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH1.885e-2555.00SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO2.462e-2552.88Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK5_ARATH1.222e-2452.83SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK19_ARATH4.644e-2448.12SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH1.765e-2352.48SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH1.652e-2150.00SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionC18013D03Rv Drought1 Citrus clementina cDNA clone C18013D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306049 ID=CX306049; Name=CX306049; organism=Citrus clementina; type=EST; length=519bp
CGAGGAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGCAATAGACAAG
GGTTCAATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAGG
AAATGTTGATGTTCAATACTAGACACCTACTGGCAACATACTAAAAGACC
ACTATCATTATAACGACATTCCTATCACAAATATTAATTACCGAGCCTTC
ATCACTTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCTC
CTCTTCTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGGA
TCTCCTCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGTC
AAGTCCAGCAAACCCTTAATGTTCAGGTAATTGGCGGCCAAGATTAGGTC
AAAGAGGGTATTCTGATCAACCTTGACGAAGTCTGCATCCCAGGTCTTGA
GATCATCCTCGGTCGACTTGTCGTCCTTCTTGTCCCCTGACCCAGCCTCA
ACGTGCTTCTTGCAGTACT
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