CX306052

Overview
NameCX306052
Unique NameCX306052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306052 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.758e-15
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  175 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 468
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ 144          
BLAST of CX306052 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  244 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 471
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  253 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 456
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
BLAST of CX306052 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 49/133 (36.84%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   64 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 459
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKA 115          
BLAST of CX306052 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  250 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 471
            +PP++LTGE+P D G+D   ++ADP  +A+ R  EV H R +ML  +G + PELL       G+  WF+ G  +
Sbjct:  167 QPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELL-------GKGAWFEVGNSV 233          
The following BLAST results are available for this feature:
BLAST of CX306052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB12_PETHY4.758e-1543.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
LH18_EUGGR3.410e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]
CB121_HORVU7.596e-1336.84Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH15_EUGGR7.109e-1140.54Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC18013D06Rv Drought1 Citrus clementina cDNA clone C18013D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306052 ID=CX306052; Name=CX306052; organism=Citrus clementina; type=EST; length=498bp
GCGGGGAATTCACCTCTCAACACTCAAACACTAGAGCTCACCAACAACTC
TGATCATTGCAAAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCG
TCGGCAAGGCTGTGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGT
GGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGCAG
CCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCG
AGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGAC
ACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACT
CGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCT
TCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGG
TTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTG
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