CX306117

Overview
NameCX306117
Unique NameCX306117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.667e-26
Identity = 55/87 (63.22%), Postives = 72/87 (82.76%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RA++KDP +LLLDEATSALD  SE++VQ+ALD++MK RTTV+VAHRLSTI+ AD +AV+  G +VEKG H  L++IP+GFY  L +L
Sbjct: 1155 RAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSL 1241          

HSP 2 Score: 104.375 bits (259), Expect = 1.907e-22
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = -1
Query:   48 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 302
            RA++++PKILLLDEATSALDAESE++VQ ALD VM+ RTT+VVAHRLSTI+N D I V+++G + E G H  L+ +  G YA+L+
Sbjct:  522 RAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELM-LRGGDYATLV 605          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB17B_ARATH (ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.850e-26
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+K PKILLLDEATSALD+ESERVVQ++LD     RTT+V+AHRLSTI+NAD+I V+ NG IVE G HE L+   DG Y SL++L
Sbjct:  510 RAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSL 596          

HSP 2 Score: 104.375 bits (259), Expect = 1.907e-22
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI-PDGFYASLIAL 302
            RA++K+P +LLLDEATSALD++SERVVQDAL+RVM  RT++++AHRLSTI+N DMI V+  G IVE G H +L+   P G Y SL  +
Sbjct: 1148 RAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGI 1235          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: ABCBA_HUMAN (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.106e-25
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RA++K+PKILLLDEATSALDAE+E +VQ+ALDR+M  RT +V+AHRLSTIKNA+M+AV+  G I E GKHE L++ P+G Y  L+   S  S
Sbjct:  646 RALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFIS 737          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.106e-25
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+K P ILLLDEATSALD+ESERVVQ+ALD     RTT+V+AHRLSTI+NAD+I VV NG I+E G HE L+   DG Y SL+ L
Sbjct:  498 RAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRL 584          

HSP 2 Score: 105.145 bits (261), Expect = 1.118e-22
Identity = 53/88 (60.23%), Postives = 71/88 (80.68%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI-NIPDGFYASLIAL 302
            RA++K+P +LLLDEATSALD++SE VVQDAL+R+M  RT+VV+AHRLSTI+  D IAV++NG +VE G H +L+   P G Y SL++L
Sbjct: 1133 RAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSL 1220          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.363e-25
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+K P +LLLDEATSALD+ESERVVQ+ALD     RTT+V+AHRLSTI+N D+I V KNG IVE G HE L+   DG Y SL+ L
Sbjct:  530 RAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAHRLSTIRNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRL 616          

HSP 2 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI-NIPDGFYASLIAL 302
            RA++K+P +LLLDEATSALD +SER+VQDAL R+M  RT+VV+AHRLSTI+N D I V+  G +VE G H +L+   P G Y SL++L
Sbjct: 1170 RAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSL 1257          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.147e-25
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = -1
Query:   48 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 302
            RA++KDPKILLLDEATSALDA SE +VQ+ALDRVM  RTTVVVAHRL TI+N D IAV++ G +VE G HE LI    G YASLI
Sbjct:  516 RAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELI-AKSGAYASLI 599          

HSP 2 Score: 110.538 bits (275), Expect = 2.661e-24
Identity = 53/89 (59.55%), Postives = 73/89 (82.02%), Query Frame = -1
Query:   36 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 302
            RA++K+P +LLLDEATSALDAESE V+Q+AL+R+M+ RTTVVVAHRLSTI+  D I V+++G IVE+G H  L++ P+G Y+ L+ L +
Sbjct: 1161 RAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQT 1249          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.195e-24
Identity = 56/87 (64.37%), Postives = 71/87 (81.61%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+K P ILLLDEATSALD+ESERVVQ+AL+     RTT+++AHRLSTI+NAD+I+VVKNG IVE G H+ L+   DG Y++L+ L
Sbjct:  510 RAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHL 596          

HSP 2 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 55/92 (59.78%), Postives = 76/92 (82.61%), Query Frame = -1
Query:   30 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINI-PDGFYASLIALHSSA 302
            RA++K+P +LLLDEATSALD++SERVVQDAL+RVM  RT+VV+AHRLSTI+N D IAV+  G +VE+G H +L++  P G Y SL++L +++
Sbjct: 1148 RAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQTTS 1239          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: MDR_ORYSJ (Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.560e-24
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = -1
Query:   33 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSS 302
            RAI+K PKILLLDEATSALD ESERVVQ+ALD     RTT+V+AHRLSTI+NAD+IAV+++G + E G H+ LI   +G Y+SL+ L  +
Sbjct:  510 RAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLSTIRNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQT 599          

HSP 2 Score: 105.145 bits (261), Expect = 1.118e-22
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI-NIPDGFYASLIALHSSAS 302
            RAI+K+P ILLLDEATSALD++SE+VVQ+ALDRVM  RT+VVVAHRLSTI+N D+I V++ G +VEKG H +L+     G Y SL+ L    +
Sbjct: 1148 RAILKNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEKGTVVEKGTHASLMAKGLSGTYFSLVNLQQGGN 1240          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 52/90 (57.78%), Postives = 69/90 (76.67%), Query Frame = -1
Query:   33 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSS 302
            RA++KDP +LLLDEATSALD  +E+ VQ+ALD++MK RTT++VAHRLSTI+ AD I V+  G +VEKG H  L++  DGFY  L +L  +
Sbjct: 1157 RAVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQEA 1246          

HSP 2 Score: 104.76 bits (260), Expect = 1.460e-22
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = -1
Query:   48 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 302
            RA++++PKILLLDEATSALDAESE++VQ ALD VM+ RTT+V+AHRLSTI+N D I V+++G + E G H  LI+   G YA+L+
Sbjct:  523 RAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELIS-RGGDYATLV 606          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.540e-24
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RA++K P ILLLDEATSALD ESERVVQ+ALD     RTT+V+AHRLSTI+NAD+I V+ NG IVE G H+ L+ I DG Y SL+ L
Sbjct:  497 RALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRLSTIRNADIICVLHNGCIVETGSHDKLMEI-DGKYTSLVRL 582          

HSP 2 Score: 103.605 bits (257), Expect = 3.253e-22
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLI-NIPDGFYASLIAL 302
            R I+K+P ILLLDEATSALD++SERVVQDAL+ VM  +T+VV+AHRLSTI+N D IAV+  G +VE G H +L+   P G Y SL++L
Sbjct: 1134 RTILKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSL 1221          
The following BLAST results are available for this feature:
BLAST of CX306117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 313
Match NameE-valueIdentityDescription
AB13B_ARATH1.667e-2663.22ABC transporter B family member 13 OS=Arabidopsis ... [more]
AB17B_ARATH4.850e-2666.67ABC transporter B family member 17 OS=Arabidopsis ... [more]
ABCBA_HUMAN4.106e-2561.96ATP-binding cassette sub-family B member 10, mitoc... [more]
AB18B_ARATH4.106e-2566.67ABC transporter B family member 18 OS=Arabidopsis ... [more]
AB22B_ARATH5.363e-2565.52ABC transporter B family member 22 OS=Arabidopsis ... [more]
AB19B_ARATH9.147e-2570.59ABC transporter B family member 19 OS=Arabidopsis ... [more]
AB15B_ARATH1.195e-2464.37ABC transporter B family member 15 OS=Arabidopsis ... [more]
MDR_ORYSJ1.560e-2462.22Putative multidrug resistance protein OS=Oryza sat... [more]
AB14B_ARATH2.038e-2457.78ABC transporter B family member 14 OS=Arabidopsis ... [more]
AB16B_ARATH4.540e-2465.52ABC transporter B family member 16 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC18014B09Rv Drought1 Citrus clementina cDNA clone C18014B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306117 ID=CX306117; Name=CX306117; organism=Citrus clementina; type=EST; length=302bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGCACTAGAGTGAAGTGCTAT
TAAGGAGGCATAAAATCCATCAGGAATATTAATCAAATTCTCATGCTTTC
CTTTCTCCACTATAACTCCATTTTTGACCACTGCAATCATGTCTGCATTC
TTGATAGTGGACAAACGATGAGCTACCACAACTGTGGTTCTGTTCTTCAT
TACCCGGTCCAATGCATCTTGAACTACCCGTTCAGATTCAGCATCAAGCG
CACTGGTAGCTTCATCTAAGAGTAATATCTTAGGATCTTTAACTATAGCT
CG
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