CX306168

Overview
NameCX306168
Unique NameCX306168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 49/101 (48.51%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGE 513
            IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF K GPLRNT++            ++IL++CL++YG  SF++ +
Sbjct:    5 IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDD 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_THAPS (Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.712e-24
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNE 507
            I+P N DPF+G L TPITSS L    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPF + GPLRN++I            ++IL++ LTIYG A+F +
Sbjct:    5 IKPYNDDPFVGHLATPITSSSLTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFAQLGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAFGQ 103          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_CYAP4 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psaL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.712e-24
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAP 528
            ++I+P NGDPF G L TPI+ S     ++ NLPAYR  +SP+LRG+E+G+AHG+ L+GP+VK GPLR++++            ++I + CL  YGI SF + E +  P
Sbjct:    8 ELIKPYNGDPFTGHLSTPISDSDFTRTFIGNLPAYRKGLSPILRGLEIGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILIATACLAAYGIVSFQKEEAAANP 115          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_CYAME (Photosystem I reaction center subunit XI OS=Cyanidioschyzon merolae GN=psaL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 501
            I+P N DPF+G L TPI SS L   YLS LP YR  VSP LRG+E+G+AHG+ L+GPFV+ GPLRNT+I            +VIL++ + +YG  SF
Sbjct:    5 IKPYNNDPFVGHLATPINSSSLTRAYLSQLPIYRRGVSPFLRGLEIGMAHGYFLIGPFVQLGPLRNTDIKYLAGLLSAIGLIVILTLGMLLYGAVSF 101          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_ISOGA (Photosystem I reaction center subunit XI OS=Isochrysis galbana GN=psaL PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNE 507
            + ++P N DPF+G+L TP+T+S     YL NLP YR  ++PLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF +
Sbjct:    3 EFVKPFNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLTPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLIIILTLALTIYGLASFQD 103          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGE 513
            + I+P N DPF+G+L TP+++S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF   +
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFTRSD 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_EMIHU (Photosystem I reaction center subunit XI OS=Emiliania huxleyi GN=psaL PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGE 513
            + ++P N DPF+G+L TP+T+S     YL NLP YR  +SPLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF   E
Sbjct:    3 EFVKPYNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLSPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLILILTLGLTIYGLASFQGTE 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_TRIEI (Photosystem I reaction center subunit XI OS=Trichodesmium erythraeum (strain IMS101) GN=psaL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGL 534
            +QP  GDPF+G L TPI+ S     ++ NLP YR  +SP+LRG+EVG+AHG+ +VGP+ K GPLR++ +            V+I +ICL+ YG+ SF    P  A  L
Sbjct:   10 VQPYKGDPFVGHLSTPISDSDFTRAFIGNLPIYRPGLSPILRGLEVGMAHGYFIVGPWTKLGPLRDSAVANLGGLISTIALVLIATICLSAYGLVSFQGKSPEGADPL 117          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PORYE (Photosystem I reaction center subunit XI OS=Porphyra yezoensis GN=psaL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGE 513
            + I+P N DPF+G+L TP+++S        NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF   +
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGTSRNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFTRAD 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_NOSP7 (Photosystem I reaction center subunit XI OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaL PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  175 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTL 540
            K + S+    +V+ P   DP +G+LETP+ +SPL  W+++NLPAYR  +SP  RG+EVG+AHG+ + GPF K GPLR+T+             VV+L+  L++Y     N   P   P +T+
Sbjct:    9 KNLPSDPRNREVVFPAFRDPQLGNLETPVNASPLSKWFINNLPAYRPGLSPARRGLEVGMAHGYWIFGPFAKLGPLRDTDNANLAGLLAAIGLVVLLTGALSLYS----NSNPPKALPSVTV 126          
The following BLAST results are available for this feature:
BLAST of CX306168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_GRATL3.935e-2448.51Photosystem I reaction center subunit XI OS=Gracil... [more]
PSAL_THAPS6.712e-2452.53Photosystem I reaction center subunit XI OS=Thalas... [more]
PSAL_CYAP46.712e-2444.44Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_CYAME1.953e-2352.58Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_ISOGA2.550e-2346.53Photosystem I reaction center subunit XI OS=Isochr... [more]
PSAL_PORPU4.350e-2345.63Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_EMIHU7.420e-2347.57Photosystem I reaction center subunit XI OS=Emilia... [more]
PSAL_TRIEI2.159e-2244.44Photosystem I reaction center subunit XI OS=Tricho... [more]
PSAL_PORYE3.683e-2244.66Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_NOSP76.945e-2140.16Photosystem I reaction center subunit XI OS=Nostoc... [more]

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Properties
Property NameValue
Genbank descriptionC18014G11Rv Drought1 Citrus clementina cDNA clone C18014G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306168 ID=CX306168; Name=CX306168; organism=Citrus clementina; type=EST; length=542bp
GCGGGGGTCTTTTAACAAACACAATCTCAAATGGCTTCTGTTTCTTCTCC
AATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTCCAGGAGCC
TGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCC
AAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAAAAGCCAAC
TTACCAGGTTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGG
AGACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTA
CCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGG
GTTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCAT
TGAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGC
CTTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATT
CAATGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGAC
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