CX306168

Overview
NameCX306168
Unique NameCX306168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_GLOVI (Photosystem I reaction center subunit XI OS=Gloeobacter violaceus GN=psaL PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  229 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPS 519
            DP  G+L TP+ +S  I W++ NLP  R  +    RG+E+G+AHG+ L+GPF   GPLRNTE+            ++I +I L+  G AS  E  P+
Sbjct:   11 DPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLS--GYASLVEDVPT 105          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PROMA (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus GN=psaL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            + P++ DP +G+L TP+ S      +L+NLP YR  +SP  RG+EVG A G+LL GP+   GPLRNT+             V IL+  L +Y
Sbjct:   39 VTPVS-DPCVGNLSTPVNSGYFTKAFLNNLPFYRGGLSPNFRGLEVGAAFGYLLYGPYAMTGPLRNTDYALTAGLLGTIGAVHILTALLVLY 129          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PROMS (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain AS9601) GN=psaL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  229 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+  L +Y
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLAAIGAVHILTALLVLY 129          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PROM2 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9215) GN=psaL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  229 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V I++  L +Y
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFAVTAGLLSAIGAVHIMTALLVLY 129          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PROM0 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9301) GN=psaL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1
Query:  229 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+    +Y
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLATIGAVHILTALFVLY 129          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PROMP (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psaL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            ++P++ DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V IL+  L +Y
Sbjct:   39 VKPVS-DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFSMTGPLRNSDFALTAGLLATIGAVHILTGLLVLY 129          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PROM5 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9515) GN=psaL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  229 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V I++  L +Y
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSDFAITAGLLAAIGAVHIMTALLVLY 129          
The following BLAST results are available for this feature:
BLAST of CX306168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_GLOVI1.074e-1340.21Photosystem I reaction center subunit XI OS=Gloeob... [more]
PSAL_PROMA3.125e-1341.30Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMS5.330e-1341.86Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM29.092e-1340.70Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM01.551e-1240.70Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMP2.025e-1239.13Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM52.025e-1239.53Photosystem I reaction center subunit XI OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC18014G11Rv Drought1 Citrus clementina cDNA clone C18014G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306168 ID=CX306168; Name=CX306168; organism=Citrus clementina; type=EST; length=542bp
GCGGGGGTCTTTTAACAAACACAATCTCAAATGGCTTCTGTTTCTTCTCC
AATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTCCAGGAGCC
TGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCC
AAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAAAAGCCAAC
TTACCAGGTTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGG
AGACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTA
CCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGG
GTTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCAT
TGAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGC
CTTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATT
CAATGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGAC
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