CX306174

Overview
NameCX306174
Unique NameCX306174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.746e-28
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+K S+G ++   ++FEK+P ++KN+G WLRY SR+G HNMY+EYRD T  GAV
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAV 106          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.746e-28
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+K S+G ++   ++FEK+P ++KN+G WLRY SR+G HNMY+EYRD T  GAV
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAV 106          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.746e-28
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+K S+G ++   ++FEK+P ++KN+G WLRY SR+G HNMY+EYRD T  GAV
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAV 106          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.636e-28
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +YQVVGR +PTE +  P ++RM+L+A NE  AKS++WYFL+ + KVK + G ++AINEI E  P K K +G W+RY SR+G HNMYKE+RDTT  GAV
Sbjct:    5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAV 102          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.478e-27
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+K ++G ++    +FEK+P K+KN+G WLRY SR+G HNMY+EYRD T +GAV
Sbjct:    9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAV 106          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.582e-27
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+K +NG  +    + E++P K+KN+G WLRY SR+G HNMY+EYRD T +GAV
Sbjct:    9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAV 106          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.026e-25
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+K +NG  +    + EK P K+KN+G WLR  SR+G HNMY+EYRD T + AV
Sbjct:    9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAV 106          
The following BLAST results are available for this feature:
BLAST of CX306174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_MOUSE1.746e-2855.1060S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_HUMAN1.746e-2855.1060S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN1.746e-2855.1060S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL20_SCHPO6.636e-2857.1460S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
RL18A_DANRE1.478e-2753.0660S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_ICTPU9.582e-2752.0460S ribosomal protein L18a OS=Ictalurus punctatus ... [more]
RL18A_SALSA4.026e-2551.0260S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]

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Properties
Property NameValue
Genbank descriptionC18014H09Rv Drought1 Citrus clementina cDNA clone C18014H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306174 ID=CX306174; Name=CX306174; organism=Citrus clementina; type=EST; length=400bp
TCGGGCTCCACAACAGAGAGTGAGAGAGAGAGAGAGAGAGATAGTTACGC
TGCGGAGATCGTCACATCTTGTATTTCCTCAAAAATGGTCACTTTCAGGT
TTCACCAGTATCAGGTTGTTGGGAGAGCTCTTCCAACTGAGTCCGATGAG
CATCCTACGATTTACAGGATGAAGTTGTGGGCCACGAATGAGGTTCGAGC
CAAGTCCAAGTTCTGGTACTTTCTTAGAAAGCTCAAGAAGGTCAAGATAA
GTAATGGTCACATGCTTGCCATTAACGAGATTTTTGAGAAGAACCCAACC
AAGATCAAGAACTATGGCTTCTGGTTGCGTTATCACAGTCGAACTGGTTA
TCACAATATGTACAAGGAGTACCGTGATACCACTCTGAACGGGGCTGTGG
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