CX306342

Overview
NameCX306342
Unique NameCX306342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = -3
Query:  223 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGK 354
            LAVLQFYKVD SGKVQ LRKECPN ECGAGTFM NHFDRHYCGK
Sbjct:   24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.929e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP  ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL++YKVD +GK+  LR+ECP   CGAG FM  H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = -3
Query:  193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354
            LAVL++YKVD  GK++ LR+ECPN  CGAG FM    DR YCG+C LTYV++K+
Sbjct:   24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77          
The following BLAST results are available for this feature:
BLAST of CX306342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS27A_DAUCA5.901e-1890.9140S ribosomal protein S27a (Fragment) OS=Daucus ca... [more]
RS27A_CHICK2.929e-1767.9240S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN3.825e-1767.9240S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO3.825e-1767.9240S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN3.825e-1767.9240S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]
RS27A_RAT6.524e-1767.9240S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE6.524e-1767.9240S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
RS27A_ICTPU8.521e-1767.9240S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RS27A_DROME1.230e-1564.1540S ribosomal protein S27a OS=Drosophila melanogas... [more]
RS27A_NEUCR1.042e-1461.1140S ribosomal protein S27a OS=Neurospora crassa GN... [more]

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Properties
Property NameValue
Genbank descriptionC18017A04Rv Drought1 Citrus clementina cDNA clone C18017A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306342 ID=CX306342; Name=CX306342; organism=Citrus clementina; type=EST; length=497bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAATTTAAAACAGATAACC
ATTTAATTAAAACGCTCCAGCAAACAAGTTTACAGTCAAACAAAATTACG
AAAGAGTCATAATTTTTGAACCACAAAAACCATAGTAATTAATACTAATT
AAAAATAGCAAAACAACCACCTAATCTCGATCAATCACCGCCAGCCTTCT
GGTAAACATAGGTGAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGG
TTAGTCATGAAGGTGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCT
CAGCCCCTGGACCTTTCCAGAACCATCGACCTTGTAAAACTGCAAGACGG
CGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAG
GTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTG
GAGTGTTGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTGCCGT
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