CX306342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18 Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = -3 Query: 223 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGK 354 LAVLQFYKVD SGKVQ LRKECPN ECGAGTFM NHFDRHYCGK Sbjct: 24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 2.929e-17 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17 Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17 Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15 Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVL++YKVD +GK+ LR+ECP CGAG FM H DRHYCGKC LT+V+ K Sbjct: 24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = -3 Query: 193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354 LAVL++YKVD GK++ LR+ECPN CGAG FM DR YCG+C LTYV++K+ Sbjct: 24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77 The following BLAST results are available for this feature:
BLAST of CX306342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306342 ID=CX306342; Name=CX306342; organism=Citrus clementina; type=EST; length=497bpback to top |