CX306342

Overview
NameCX306342
Unique NameCX306342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_KLULA (40S ribosomal protein S27a OS=Kluyveromyces lactis GN=ubi3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = -3
Query:  196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354
            LAVL +YKVD  GKV  LRKECPN  CG G F+ NH DR YCGKC  T+  QK
Sbjct:   24 LAVLNYYKVDDEGKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTFATQK 74          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_PLUXY (40S ribosomal protein S27a OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  199 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQ 354
            LAVL+FYKVD +GK+  LR+EC + +CGAG FM    DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTSEQCGAGVFMAVMEDRHYCGKCHRTMVFK 75          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.705e-12
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = -3
Query:  208 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTY 354
            LAVL +YKVD  GKV  LR+EC N  CGAG F+ NH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_SPOFR (40S ribosomal protein S27a OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.705e-12
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = -3
Query:  199 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQ 354
            LAVL+FYKVD +GK+  LR+EC   +CGAG FM    DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_MANSE (40S ribosomal protein S27a OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.705e-12
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = -3
Query:  199 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQ 354
            LAVL+FYKVD +GK+  LR+EC   +CGAG FM    DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_CAEBR (40S ribosomal protein S27a OS=Caenorhabditis briggsae GN=ubl-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = -3
Query:  193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354
            LAVL++YKVD +GK+  LRKEC    CG G FM  H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = -3
Query:  193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354
            LAVL++YK+D +GK+  LRKEC    CG G FM  H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27B_SCHPO (40S ribosomal protein S27b OS=Schizosaccharomyces pombe GN=ubi5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = -3
Query:  211 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLT 354
            LAVL++YKV+  G V+ LR+ECPN  CGA TFM NH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_SCHPO (40S ribosomal protein S27a OS=Schizosaccharomyces pombe GN=ubi3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = -3
Query:  211 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLT 354
            LAVL++YKV+  G V+ LR+ECPN  CGA TFM NH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
The following BLAST results are available for this feature:
BLAST of CX306342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS27A_KLULA1.273e-1264.1540S ribosomal protein S27a OS=Kluyveromyces lactis... [more]
RS27A_PLUXY2.837e-1259.6240S ribosomal protein S27a OS=Plutella xylostella ... [more]
RS37_YEAST3.705e-1263.2740S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RS27A_SPOFR3.705e-1259.6240S ribosomal protein S27a OS=Spodoptera frugiperd... [more]
RS27A_MANSE3.705e-1259.6240S ribosomal protein S27a OS=Manduca sexta PE=3 S... [more]
RS27A_CAEBR1.408e-1155.5640S ribosomal protein S27a OS=Caenorhabditis brigg... [more]
RS27A_CAEEL1.839e-1153.7040S ribosomal protein S27a OS=Caenorhabditis elega... [more]
RS27B_SCHPO2.401e-1164.5840S ribosomal protein S27b OS=Schizosaccharomyces ... [more]
RS27A_SCHPO2.401e-1164.5840S ribosomal protein S27a OS=Schizosaccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017A04Rv Drought1 Citrus clementina cDNA clone C18017A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306342 ID=CX306342; Name=CX306342; organism=Citrus clementina; type=EST; length=497bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAATTTAAAACAGATAACC
ATTTAATTAAAACGCTCCAGCAAACAAGTTTACAGTCAAACAAAATTACG
AAAGAGTCATAATTTTTGAACCACAAAAACCATAGTAATTAATACTAATT
AAAAATAGCAAAACAACCACCTAATCTCGATCAATCACCGCCAGCCTTCT
GGTAAACATAGGTGAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGG
TTAGTCATGAAGGTGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCT
CAGCCCCTGGACCTTTCCAGAACCATCGACCTTGTAAAACTGCAAGACGG
CGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAG
GTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTG
GAGTGTTGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTGCCGT
back to top