CX306349

Overview
NameCX306349
Unique NameCX306349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE P A+ F  D+PGL          + R+L +SGE  +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   58 DVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.693e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE P ++VF  D+PGL+         E  +L ISGE  +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   49 DVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGE----GSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D K+ P A+ F  D+PGL+         E R+L ISGE    G +E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   56 DVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  287 IDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGEGSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 550
            +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   29 MDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE P ++VF  D+PG++         +  +L ISGE  +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   46 DVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE P ++VF  D+PGL+            +L ISG+ ++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   54 DVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE P ++VF  D+PGL+            +L ISGE  +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   48 DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE P A+ F  D+PGL          + R+L ISGE  +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE P ++VF AD+PG++         +  +L +SGE ++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   59 DVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = -3
Query:  287 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 547
            D KE   A+ F  D+PGL          + R+L ISGE  +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   49 DVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
The following BLAST results are available for this feature:
BLAST of CX306349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HSP22_MAIZE6.656e-1445.9817.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_SOLPE8.693e-1443.6817.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP18_ORYSJ1.135e-1345.0518.0 kDa class II heat shock protein OS=Oryza sati... [more]
HS178_ORYSJ4.314e-1339.2517.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_PEA7.359e-1340.2317.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN7.359e-1339.0817.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP21_IPONI1.639e-1244.3217.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE2.141e-1244.8317.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP22_IPONI3.652e-1240.4518.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE6.230e-1245.9817.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionC18017A11Rv Drought1 Citrus clementina cDNA clone C18017A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306349 ID=CX306349; Name=CX306349; organism=Citrus clementina; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTCTTTTTTTCCATTTAAAAAACTAGTTACA
ACGCTTGAGACTGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCAC
ATCAAATTAAACAGGGGGAAGGGAAGAAAACAAACACACACACACATACA
AACACACAAGGGCTTTGCCTTCGTACCAAATTTATTAGCAAACCAAAGAC
ACTATCTTGAAAACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGC
CTTAACTTCAGGTTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCA
CACCATTCTCCATGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGC
AACCTGAACCTCCTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCA
CTTGTCATTCTTCTCTTCCTGCTCCTTGCTCCCCTCTCCGCTTATCTGCA
GAATCCTGCCCTCTTCAACCTCAACTTTTACTTCTTCTTTCCTCAGCCCT
GGAAGATCAGCTTTGAATACGTGAGCCTGAGGAGTCTCTTTCCAGTCAAT
TCTTG
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