CX306381

Overview
NameCX306381
Unique NameCX306381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.099e-15
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  263 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 496
            PP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y     E+  RSW
Sbjct:   67 PPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.676e-15
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  263 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 496
            PP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.676e-15
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = -1
Query:  284 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 496
            PP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y
Sbjct:   67 PPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.676e-15
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  263 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 496
            PP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.676e-15
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  263 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 496
            PP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.106e-15
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = -1
Query:  257 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWTQ 496
            PP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  +++Y     E+   SW +
Sbjct:   67 PPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.975e-15
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  281 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 496
            PP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE
Sbjct:   67 PPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYE 138          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.975e-15
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  269 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR 496
            PPKV    K+FHPNI+ +G ICL+IL+E WSPAL +  ++L + SL  +PN +DPL  E A +   DK ++ +  R
Sbjct:   95 PPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = -1
Query:  260 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR-----SWT 496
            PP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  + +YE   R     SWT
Sbjct:   67 PPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = -1
Query:  281 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 496
            PP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ ++ +YE
Sbjct:   67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
The following BLAST results are available for this feature:
BLAST of CX306381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
UBC2_TRIHA2.099e-1544.58Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_YEAST4.676e-1543.37Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_USTMA4.676e-1547.89Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_CANGA4.676e-1543.37Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASHGO4.676e-1543.37Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_DEBHA6.106e-1542.35Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_CRYNE7.975e-1547.22Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC12_CANGA7.975e-1546.05NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC2_YARLI1.042e-1442.86Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC1_CAEEL1.042e-1447.22Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionC18017D09Rv Drought1 Citrus clementina cDNA clone C18017D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306381 ID=CX306381; Name=CX306381; organism=Citrus clementina; type=EST; length=496bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAGACCATTAACTACGTT
CCATCGAAGAAGCTTCAAACACAAACATTCAACATTAACATAAAAACGTC
CCGCCCTTGCAACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCC
TCCCCAAAGCAAGTTAAAGAAAATAGATAGACAACACACACAACATATTT
CAATAAATGCTCCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGC
ATACTTCTGTGTCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGG
ACTTGTACATGTGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGA
TCAGTAAGCAAGGAGCAGATAGAGAGCAGGACCTTTGAAATGGTAAGCGC
TGGACTCCACTGTTCTTTAAGGATATCAAGACAGATGCTTCCATTGCTGT
TGATGTTCGGGTGGAACACCTTGGTCCTAAAAGCAACCTTTGGGGG
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