CX306388

Overview
NameCX306388
Unique NameCX306388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = -3 
Query:  218 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 448
            + + K ++VDF A+WC PCK+++P+L E+A +      V  + VDVD   + A ++ V ++PT +L K+G  ++RIVGAK
Sbjct:   20 LGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAK 99
[Close]
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO1_DROYA (Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = -3 
Query:  206 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 493
            S  T+  ++++++   A  KLIV+DF A+WC PCK M   +  LA+K     + LK+DVD+ + + E + V +MPTFV  +  + L    GA + +L
Sbjct:    3 SVRTMTDFHKRIEA--ADDKLIVLDFYANWCGPCKDMESTVKSLARKYSTKAVVLKIDVDKFEELTERYKVRSMPTFVFLRNNRRLAAFSGADEHKL 97
The following BLAST results are available for this feature:
BLAST of CX306388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_MYCSM6.169e-1140.00Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO1_DROYA8.057e-1136.08Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC18017E06Rv Drought1 Citrus clementina cDNA clone C18017E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306388 ID=CX306388; Name=CX306388; organism=Citrus clementina; type=EST; length=528bp
TTTTTTTTTTTTTTTTTTTTTTTATAGAAGATTGTCATTTATTCGTATAT
ACAGGCCTGTTAAACATGGTACCATATTCTTACATTAAGCAACCACAAAC
ACACACCTTACAATAAAAGACCAATGAGATTCATGTACGCATCAATCAAG
CATTAGCAGTAGTTGCATTCTCAACAGTTGTTGCGTGCTTTTCGACAGCC
AGCTGCAGCTCATCTTTCTTCGCTCCCACAATCCTCTCCAGGACTTTGCC
TTCTTTCGTCAGTACAAAGGTCGGCATGGCTTCCACAGCCCATTCCTCAG
CGACGGACTTCAATTCATCAACATCCACCTTCAAGAATATGACAGCGGGC
AGCTTCTTCGCCAATTCACTCAAAATTGGAGACATCAACTTGCATGGCGG
GCACCATGAAGCCGTAAAATCCACCACTATCAGTTTCTTTGCCGCAATGC
CCTTTTGGAGCTGCTCGTTCCAGGATTCAACAGTGTGGCAGCTGATCACT
TGTCCCTCCTCGGCCATCTTAATTATGA
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