CX306388

Overview
NameCX306388
Unique NameCX306388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  185 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 427
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  185 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 427
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  185 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 427
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  185 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 427
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  185 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 427
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  185 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 427
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  185 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 427
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = -3
Query:  188 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 430
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = -3
Query:  185 KLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 436
            K ++VDF ASWC PC ++ P++ +LA       I  K++VDE  ++A ++ + ++PT ++ K GKV++++VGA  K+ +   +++H
Sbjct:   21 KAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEH 106          
BLAST of CX306388 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = -3
Query:  218 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 448
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD    +A E+ V ++PT +L + G+ ++RIVGAK
Sbjct:  364 LSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAK 441          
The following BLAST results are available for this feature:
BLAST of CX306388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_STAAR2.769e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN2.769e-1139.76Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.769e-1139.76Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.769e-1139.76Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB2.769e-1139.76Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA82.769e-1139.76Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA32.769e-1139.76Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIOM_BOVIN2.769e-1140.96Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
THIO_CHLLT4.723e-1134.88Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
TRXB_MYCLE6.169e-1139.74Bifunctional thioredoxin reductase/thioredoxin OS=... [more]

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Properties
Property NameValue
Genbank descriptionC18017E06Rv Drought1 Citrus clementina cDNA clone C18017E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306388 ID=CX306388; Name=CX306388; organism=Citrus clementina; type=EST; length=528bp
TTTTTTTTTTTTTTTTTTTTTTTATAGAAGATTGTCATTTATTCGTATAT
ACAGGCCTGTTAAACATGGTACCATATTCTTACATTAAGCAACCACAAAC
ACACACCTTACAATAAAAGACCAATGAGATTCATGTACGCATCAATCAAG
CATTAGCAGTAGTTGCATTCTCAACAGTTGTTGCGTGCTTTTCGACAGCC
AGCTGCAGCTCATCTTTCTTCGCTCCCACAATCCTCTCCAGGACTTTGCC
TTCTTTCGTCAGTACAAAGGTCGGCATGGCTTCCACAGCCCATTCCTCAG
CGACGGACTTCAATTCATCAACATCCACCTTCAAGAATATGACAGCGGGC
AGCTTCTTCGCCAATTCACTCAAAATTGGAGACATCAACTTGCATGGCGG
GCACCATGAAGCCGTAAAATCCACCACTATCAGTTTCTTTGCCGCAATGC
CCTTTTGGAGCTGCTCGTTCCAGGATTCAACAGTGTGGCAGCTGATCACT
TGTCCCTCCTCGGCCATCTTAATTATGA
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