CX307760

Overview
NameCX307760
Unique NameCX307760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_DANRE (Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_CHICK (Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_BOVIN (Casein kinase II subunit beta OS=Bos taurus GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK+YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_SPOFR (Casein kinase II subunit beta OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            D+P  + VK+YCP+C D+Y P+     + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:  126 DVPGEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPEYRPKRPASQFVPRLYGFKIH 193
The following BLAST results are available for this feature:
BLAST of CX307760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CSK2B_XENLA3.434e-1647.06Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT3.434e-1647.06Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT3.434e-1647.06Casein kinase II subunit beta OS=Oryctolagus cunic... [more]
CSK2B_PIG3.434e-1647.06Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE3.434e-1647.06Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN3.434e-1647.06Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]
CSK2B_DANRE3.434e-1647.06Casein kinase II subunit beta OS=Danio rerio GN=cs... [more]
CSK2B_CHICK3.434e-1647.06Casein kinase II subunit beta OS=Gallus gallus GN=... [more]
CSK2B_BOVIN3.434e-1647.06Casein kinase II subunit beta OS=Bos taurus GN=CSN... [more]
CSK2B_SPOFR1.305e-1544.12Casein kinase II subunit beta OS=Spodoptera frugip... [more]

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Properties
Property NameValue
Genbank descriptionC20001E07SK OF2 Citrus clementina cDNA clone C20001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307760 ID=CX307760; Name=CX307760; organism=Citrus clementina; type=EST; length=372bp
AGACATCCCTCGTTCAAGTACTGTTAAAATATACTGCCCGAAATGTGAAG
ATATATATTATCCTCGGCCCAAGTACCAAGGCAATATCGATGGTGCTTAT
TTTGGGACTACCTTTCCTCACCTATTTCTAATGACATATGGACACTTAAA
GCCACAAAAGGCTACACAGAGCTATGTCCCAAGGGTTTTTGGTTTCAAGC
TTCACAAGCCCTAACATTGGAGTTGCAAGTTGCGTTAGTGTTGAAAATTC
CGGCGGCAGTGCATACCACATTTTCTCTTTTGCCTGCCTCTGTACTGAAA
GTATGCATGGCCCCAACAAGTGAGGTAAAGCGGGGTACTTCTGAATATAT
TACAATCGATTCGCATATGGAT
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