CX307760

Overview
NameCX307760
Unique NameCX307760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_CAEEL (Casein kinase II subunit beta OS=Caenorhabditis elegans GN=kin-10 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.958e-15
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            D+P  + VK+YCP+C D++ PR     + DG+YFGT FPH+    +  L+P++    +VP+++GFK+H
Sbjct:  125 DVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPVTQFVPKLYGFKIH 192          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: SSL_DROME (Suppressor-of-stellate-like protein OS=Drosophila melanogaster GN=Ssl PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 208
            D+   + VKIYCP C ++Y P P + G +DGA FGT+FPH+F M    L P    + Y+PR++GF+LHK
Sbjct:  119 DVWDKAQVKIYCPSCNNVYIPLP-HNGMLDGAMFGTSFPHMFFMQLPSLIPSPPVEKYIPRIYGFQLHK 186          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2C_SCHPO (Probable casein kinase II subunit beta-2 OS=Schizosaccharomyces pombe GN=SPBC2G5.02c PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAT---QSYVPRVFGFKL 202
            DI     V ++CP C D+Y P      NIDG++FG TFPHLF  +Y  L P+++    + Y PR++GFK+
Sbjct:  156 DIVGKMPVMLFCPNCLDLYAPSSSRYKNIDGSFFGATFPHLFFESYPELNPKRSIPCGKIYQPRIYGFKV 225          
The following BLAST results are available for this feature:
BLAST of CX307760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CSK2B_CAEEL4.958e-1541.18Casein kinase II subunit beta OS=Caenorhabditis el... [more]
SSL_DROME6.475e-1547.83Suppressor-of-stellate-like protein OS=Drosophila ... [more]
CSK2C_SCHPO1.493e-1142.86Probable casein kinase II subunit beta-2 OS=Schizo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20001E07SK OF2 Citrus clementina cDNA clone C20001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307760 ID=CX307760; Name=CX307760; organism=Citrus clementina; type=EST; length=372bp
AGACATCCCTCGTTCAAGTACTGTTAAAATATACTGCCCGAAATGTGAAG
ATATATATTATCCTCGGCCCAAGTACCAAGGCAATATCGATGGTGCTTAT
TTTGGGACTACCTTTCCTCACCTATTTCTAATGACATATGGACACTTAAA
GCCACAAAAGGCTACACAGAGCTATGTCCCAAGGGTTTTTGGTTTCAAGC
TTCACAAGCCCTAACATTGGAGTTGCAAGTTGCGTTAGTGTTGAAAATTC
CGGCGGCAGTGCATACCACATTTTCTCTTTTGCCTGCCTCTGTACTGAAA
GTATGCATGGCCCCAACAAGTGAGGTAAAGCGGGGTACTTCTGAATATAT
TACAATCGATTCGCATATGGAT
back to top