CX307761

Overview
NameCX307761
Unique NameCX307761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.804e-36
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFMDVVSI
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 5.760e-35
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL  REV AILMQRHV VD KVRTD TYPAGFMDV+++
Sbjct:    1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITL 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 7.522e-35
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + VD KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDITYPAGFMDVISI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 92
[Close]
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 92
The following BLAST results are available for this feature:
BLAST of CX307761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4_BOMMO6.804e-3677.1740S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_YEAST5.760e-3576.0940S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_ICTPU7.522e-3577.1740S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_XENTR9.825e-3576.0940S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_XENLA9.825e-3576.0940S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4_CRIGR9.825e-3576.0940S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_CHICK9.825e-3576.0940S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_BOVIN9.825e-3576.0940S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4Y1_MONDO9.825e-3576.0940S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_RAT9.825e-3576.0940S ribosomal protein S4, X isoform OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC20001E09SK OF2 Citrus clementina cDNA clone C20001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307761 ID=CX307761; Name=CX307761; organism=Citrus clementina; type=EST; length=381bp
GAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTTTGTTTTGCAG
GACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAA
ATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCA
CTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTG
GGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAAC
CGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCA
ACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTG
CTGGGTTCATGGATGTTGTGTCAATTCCAAA
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