CX307761

Overview
NameCX307761
Unique NameCX307761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.419e-33
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV  I MQR + VD KVRTD  YP GFMDVV+I
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTI 92          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.196e-33
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VD KVRTD T+PAGFMDV+ +
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQL 92          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.196e-33
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+MDV+++
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITL 92          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 9.196e-33
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +D KVR D TYPAGF+DV+SI
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISI 92          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.504e-30
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V  KVRTD TYPAGFMDV+++
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITL 92          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.374e-28
Identity = 63/90 (70.00%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VD KVRT   +P GFMDVV+I
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAI 91          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.168e-25
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  104 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMDVVSI 376
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRI 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.572e-24
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 2
Query:  158 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISI 73          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.799e-20
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+ +VRT+  +P G  DVVSI
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSI 92          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MDVVSIP
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIP 94          
The following BLAST results are available for this feature:
BLAST of CX307761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4_LYSTE1.419e-3373.9140S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_YARLI9.196e-3372.8340S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_DROME9.196e-3372.8340S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y2_HUMAN9.196e-3372.8340S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL2.504e-3068.4840S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_CAEEL1.374e-2870.0040S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH3.168e-2562.3740S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_HORSE1.572e-2473.9740S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ENCCU1.799e-2048.9140S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_PYRKO1.425e-1748.3530S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionC20001E09SK OF2 Citrus clementina cDNA clone C20001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307761 ID=CX307761; Name=CX307761; organism=Citrus clementina; type=EST; length=381bp
GAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTTTGTTTTGCAG
GACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAA
ATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCA
CTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTG
GGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAAC
CGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCA
ACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTG
CTGGGTTCATGGATGTTGTGTCAATTCCAAA
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