CX307761

Overview
NameCX307761
Unique NameCX307761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD KVR D  +P G MDVVSIP
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.175e-17
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+L+LR+ L YA   RE   ++    VLVD   R D  YP G MDV+S+P
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIP 94          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  101 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +D +VR +  YP GFMDV+ I
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEI 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.988e-16
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  101 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++I+R+ L YA T RE   ++ + H  VD +VR +  YP G MDV+ I
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEI 93          
The following BLAST results are available for this feature:
BLAST of CX307761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4E_PYRHO1.861e-1748.3530S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_META33.175e-1745.0530S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_PYRFU5.416e-1747.2530S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_PYRAB5.416e-1747.2530S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METM71.207e-1646.1530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM61.207e-1646.1530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM51.207e-1646.1530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METMP3.511e-1645.0530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_HYPBU3.511e-1644.0930S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_STAMF5.988e-1647.3130S ribosomal protein S4e OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionC20001E09SK OF2 Citrus clementina cDNA clone C20001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307761 ID=CX307761; Name=CX307761; organism=Citrus clementina; type=EST; length=381bp
GAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTTTGTTTTGCAG
GACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAA
ATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCA
CTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTG
GGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAAC
CGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCA
ACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTG
CTGGGTTCATGGATGTTGTGTCAATTCCAAA
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