CX307763

Overview
NameCX307763
Unique NameCX307763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.704e-39
Identity = 78/121 (64.46%), Postives = 91/121 (75.21%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L EM V  I VE G K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCPWVSKVWT+VEKHKK  +TSIIHGK  HEET+AT+SFAG Y++V +++EA  V DYILG
Sbjct:   96 HNPSVNDHLREMDVLFISVEGGVKDFSGVATGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWTTVEKHKKQSFTSIIHGKVKHEETLATSSFAGTYLVVLDLEEARLVADYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.704e-39
Identity = 74/121 (61.16%), Postives = 95/121 (78.51%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ K   I+DTTCPWVSKVW +VEKHKK  +TSIIHGK+ HEET+AT+SFAGKY++V +++EA YV +YILG
Sbjct:   96 HNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATVQEMKLLHEKGCHIIDTTCPWVSKVWHTVEKHKKHVFTSIIHGKFKHEETLATSSFAGKYLVVLDLEEANYVSEYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROM0 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.704e-39
Identity = 74/121 (61.16%), Postives = 95/121 (78.51%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ K   I+DTTCPWVSKVW +VEKHKK  +TSIIHGK+ HEET+AT+SFAGKY++V +++EA YV +YILG
Sbjct:   96 HNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATVQEMKLLHEKGCHIIDTTCPWVSKVWHTVEKHKKHVFTSIIHGKFKHEETLATSSFAGKYLVVLDLEEANYVSEYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROMP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.225e-39
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ K   I+DTTCPWVSKVW +VEKHKK  +TSIIHGK+ HEET+AT+SFA KY++V N++EA YV +YILG
Sbjct:   96 HNPSVNDHLRKMNVKFISAKNGIKDFSLVSDGDVVILPAFGATVQEMKLLHEKGCHIIDTTCPWVSKVWHTVEKHKKHTFTSIIHGKFKHEETLATSSFADKYLVVLNLEEANYVSEYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.225e-39
Identity = 73/121 (60.33%), Postives = 95/121 (78.51%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ K   I+DTTCPWVSKVW +VEKHKK  +TSIIHGK+ HEET+AT+SFAGKY++V +++EA Y+ +YILG
Sbjct:   96 HNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATVQEMKLLHEKGCHIIDTTCPWVSKVWHTVEKHKKHVFTSIIHGKFKHEETLATSSFAGKYLVVLDLEEANYISEYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.795e-39
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L +M V  I  E+G K F VV  GDVV+LPAFGA V++M  L+++   I+DTTCPWVSKVW +VEKHKK  +TSIIHGKY HEET+AT+SFAG Y+++ +++EA YV DYILG
Sbjct:   96 HNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATVQDMKLLHDRGCHIIDTTCPWVSKVWHTVEKHKKHTFTSIIHGKYKHEETLATSSFAGTYLVLFDLEEANYVSDYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.795e-39
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V EM  L+ +   I+DTTCPWVSKVW +VEKHKK +++SIIHGK  HEET+AT+SFAG Y++V ++KEA+YV DYILG
Sbjct:   96 HNPSVNDHLRNMNVRFISAEKGIKDFSSVEEGDVVILPAFGATVHEMKLLHERGCHIIDTTCPWVSKVWHTVEKHKKHEFSSIIHGKVKHEETLATSSFAGTYLVVLDLKEAQYVSDYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.795e-39
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L +M V  I  E+G K F VV  GDVV+LPAFGA V++M  L+++   I+DTTCPWVSKVW +VEKHKK  +TSIIHGKY HEET+AT+SFAG Y+++ +++EA YV DYILG
Sbjct:   96 HNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATVQDMKLLHDRGCHIIDTTCPWVSKVWHTVEKHKKHTFTSIIHGKYKHEETLATSSFAGTYLVLFDLEEANYVSDYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.957e-39
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN+ L EM V  I  E G K F  VN GDVV+LPAFGA V+EM  L+ +   I+DTTCPWVSKVW +VEKHKK ++TSIIHGK  HEET+AT+SFAG Y++V ++ EA+ V DYILG
Sbjct:   96 HNPSVNEHLREMDVLFIHAEGGVKDFSCVNDGDVVILPAFGATVQEMELLHERGCHIIDTTCPWVSKVWHTVEKHKKQEFTSIIHGKVKHEETLATSSFAGTYLVVLDLDEAQLVADYILG 216
[Close]
BLAST of CX307763 vs. ExPASy Swiss-Prot
Match: ISPH_PROM5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=ispH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.474e-39
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 2 
Query:    2 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILG 364
            HNP+VN  L  M V+ I  + G K F  V+ GDVV+LPAFGA V+EM  L+ K  QI+DTTCPWVSKVW +VEKHKK  +TSIIHGKY HEET+AT SFAG Y++V ++ EAEYV +YI G
Sbjct:   96 HNPSVNNHLSRMNVKIISAKNGIKDFSSVSTGDVVILPAFGATVQEMQLLHEKKCQIIDTTCPWVSKVWHTVEKHKKHTFTSIIHGKYKHEETLATRSFAGNYLVVFDLDEAEYVSNYIQG 216
The following BLAST results are available for this feature:
BLAST of CX307763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ISPH_SYNS31.704e-3964.464-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS1.704e-3961.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM01.704e-3961.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMP2.225e-3961.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM92.225e-3960.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMT3.795e-3961.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMA3.795e-3961.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM13.795e-3961.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM4.957e-3961.984-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM56.474e-3961.984-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC20001E12SK OF2 Citrus clementina cDNA clone C20001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307763 ID=CX307763; Name=CX307763; organism=Citrus clementina; type=EST; length=393bp
ACACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATA
TACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTAAATAAGGGTGAT
GTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGAAATGGTGACTCT
GAATAACAAGAATGTACAGATTGTTGATACAACTTGCCCTTGGGTGTCTA
AGGTCTGGACTTCTGTGGAGAAGCACAAGAAGGGAGACTACACTTCAATT
ATTCACGGTAAATATTCTCATGAGGAAACTGTAGCAACTGCATCGTTTGC
AGGAAAGTATATCATAGTCAAGAATATGAAAGAGGCTGAGTACGTGTGTG
ATTACATTCTTGGGGGTGAACTTAATGGATCTAGCTCAACAAA
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