CX307764

Overview
NameCX307764
Unique NameCX307764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.518e-35
Identity = 65/130 (50.00%), Postives = 91/130 (70.00%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN 391
            F+ P++ WDFRL  V SIN SGHKYGLVY GIGWV+W+++  LPEELIF ++YLG + PT  +NFS+ +S +I QYY  +R GFEGYR + +   + A  L   +E+TG F+I +    +P+V + LKD+
Sbjct:  252 FVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDD 381          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LKD +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.166e-33
Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEGVPLVAFSLKDNK 394
            F+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG+P V F LK+ +
Sbjct:  253 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGE 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.269e-31
Identity = 62/133 (46.62%), Postives = 89/133 (66.92%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG-VPLVAFSLKDNKR 397
            FL PE+ WDFRLP VKSIN SGHK+GL   G+GWVVWR K D+ ++L+F +NYLG + PTF+LNFS+   Q++ QYY  +R G  GY  V + C ++ + + + ++K G F+IV    G +P   + LK + +
Sbjct:  251 FLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAK 383          
The following BLAST results are available for this feature:
BLAST of CX307764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISIN1.518e-3550.00Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_SHIFL1.088e-3348.51Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI1.088e-3348.51Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL61.088e-3348.51Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO571.088e-3348.51Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL1.088e-3348.51Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI1.088e-3348.51Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL61.088e-3348.51Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO573.166e-3347.76Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADA_DICDI2.269e-3146.62Glutamate decarboxylase A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC20001F01SK OF2 Citrus clementina cDNA clone C20001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307764 ID=CX307764; Name=CX307764; organism=Citrus clementina; type=EST; length=404bp
ATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGGTGAAGA
GTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGTATGCTGGTATTGGT
TGGGTTGTTTGGAGAAACAAAGAAGACTTGCCTGAAGAACTCATCTTCCA
CATCAATTACCTAGGAGCTGATCAACCCACCTTCACCCTCAATTTTTCTA
AAGGTTCTAGCCAAGTAATTGCTCAGTACTACCAACTAATCCGCTTAGGT
TTTGAGGGATACCGCAATGTGATGGAGAATTGTCACGAAAATGCAATGGT
GCTGAAAGAAGGACTAGAGAAAACCGGCCGCTTCAACATTGTGTCAAAGG
ACGAAGGGGTTCCGTTGGTGGCATTTTCTCTCAAGGACAACAAACGCCAC
GATG
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