CX307790

Overview
NameCX307790
Unique NameCX307790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.159e-21
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  162 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            ++VYFDVE  G+P GR+V  L+   VPKTAENFRALCTGEKG G       Y GS FHR+IP FMLQGGDFT G
Sbjct:    2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAG 68          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.159e-21
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 3
Query:  153 EITNKVYFDVEIA---GKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            +IT+KVYFD+ +    GK AGRIV+GL+G  VP+T ENFRALCTGEKG G       YKGSTFHR+I  FM+QGGDF  G
Sbjct:   87 KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKG 159          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.043e-21
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  168 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRIIPSFMLQGGDFT 377
            VYFD+   GKP GR+V  L+   VPKTA NFR+LCTG+KGI  KSGKPL YK S FHR+I  FM QGGDFT
Sbjct:    6 VYFDISCNGKPKGRVVFKLYDDVVPKTAANFRSLCTGDKGISPKSGKPLSYKDSIFHRVIKDFMCQGGDFT 76          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 54/103 (52.43%), Postives = 63/103 (61.17%), Query Frame = 3
Query:   75 LTMLWAIVLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            L ++  + L A   S  A    +    +T KV+FDV I  K  GRIV+GLFGK VPKT ENF AL TGEKG G       YKGS FHR+I  FM+QGGDFT G
Sbjct:    9 LPLVLCVGLSALVPSAGASGFRKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDFTRG 104          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  153 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            EIT+KVYFD++   +  G+IVMGL+G  VPKT ENFRALCTGE G G       YKGS FHR+I +FM+QGGDFT G
Sbjct:   29 EITHKVYFDIKQGEESLGKIVMGLYGDVVPKTVENFRALCTGETGKG-------YKGSKFHRVIKNFMIQGGDFTRG 98          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.792e-20
Identity = 50/73 (68.49%), Postives = 52/73 (71.23%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            K +FD+ I GKPAGRIV  LF   VPKT ENFRALCTGEKG G       YKGS FHRIIP FM QGGDFT G
Sbjct:    4 KCFFDISIGGKPAGRIVFALFDD-VPKTVENFRALCTGEKGFG-------YKGSKFHRIIPGFMCQGGDFTAG 68          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.792e-20
Identity = 48/79 (60.76%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  150 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            K+   +V+ DV I G  AGRIVM L+    P+T  NF  LCTG  G GK SGKPLHYKGSTFHR+I +FM+QGGDFT G
Sbjct:    3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKG 81          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.992e-20
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  126 AKKSDQNLK--EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            A ++D+  K  ++T KV+FD+ +  + AGR+V+GLFGK VPKT ENF AL TGEKG G       +KGS FHR+I  FM+QGGDFT G
Sbjct:   21 ASRADERKKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFG-------FKGSKFHRVIKDFMIQGGDFTRG 101          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.214e-20
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR++  FM+QGGDF+ G
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEG 82          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.214e-20
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR++  FM+QGGDF+ G
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEG 82          
The following BLAST results are available for this feature:
BLAST of CX307790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CYPH_YEAST6.159e-2164.86Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
CP20B_ARATH6.159e-2162.50Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPID_CANAL8.043e-2166.20Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
PPIC_BOVIN1.051e-2052.43Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIB_YARLI1.051e-2062.34Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIA_ECHGR1.792e-2068.49Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
CYP1_BRUMA1.792e-2060.76Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPIB_CHICK3.992e-2054.55Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIG_RAT5.214e-2059.46Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE5.214e-2059.46Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionC20001H12SK OF2 Citrus clementina cDNA clone C20001H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307790 ID=CX307790; Name=CX307790; organism=Citrus clementina; type=EST; length=384bp
GCGGAACCCCAAAGTGAGTGACTGCGAAACGAGAAACAACGAAGTGATAC
ATGGCTTCGACAAAATTTCTTCCACTCACGATGCTATGGGCTATTGTCCT
GTTTGCCACTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTTGA
AAGAAATCACAAACAAAGTTTACTTTGACGTTGAGATTGCTGGAAAACCT
GCCGGACGTATTGTAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGC
AGAAAATTTCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGCG
GGAAGCCACTCCACTACAAGGGAAGTACGTTCCATAGGATTATTCCCAGC
TTTATGCTTCAAGGAGGTGATTTCACTCTTGGTG
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