CX307825

Overview
NameCX307825
Unique NameCX307825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length464
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_PSEAB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.564e-30
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSA---NAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H+ VDL  E+ LD E+KSWLAFA QK  EV  LA+A    +     +A   + A QASR SSPR+    VQ   AA+K SD +R +  + R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ +K  K+SE EY+ ++  EI   V++QE+L +DV
Sbjct:  332 HSPVDLEREDGLDAELKSWLAFAVQKCREVAVLARAATEPEAAEVLAALEESRAVQASRASSPRIHKPAVQARLAAIKASDAQRRSPFAERIARQRAGLDLPAFPTTTIGSFPQTSSIRLARQSFKQGKLSEAEYIEAMHSEIRHAVQIQEQLGLDV 488          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_PSEA8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.564e-30
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSA---NAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H+ VDL  E+ LD E+KSWLAFA QK  EV  LA+A    +     +A   + A QASR SSPR+    VQ   AA+K SD +R +  + R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ +K  K+SE EY+ ++  EI   V++QE+L +DV
Sbjct:  332 HSPVDLEREDGLDAELKSWLAFAVQKCREVAVLARAATEPEAAEVLAALEESRAVQASRASSPRIHKPAVQARLAAIKASDAQRRSPFAERIARQRAGLDLPAFPTTTIGSFPQTSSIRLARQSFKQGKLSEAEYIEAMHSEIRHAVQIQEQLGLDV 488          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_BURCM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.267e-30
Identity = 73/156 (46.79%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H  VDL +E KLD EI+SWLAFA QK+ E+  LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT ++R  R ++KA  + E  Y A+++ EI + V+ QE L +DV
Sbjct:  333 HVPVDLASEEKLDAEIRSWLAFALQKLDELKVLATALNQGRDKVADALAANAAAIDSRRRSPRVNNPAVKAALARIDAQLGNRASPYTQRAPKQSARLNLPAFPTTTIGSFPQTADIRHARSQFKAGALDEAGYRAAMQAEIERSVREQESLGLDV 488          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_BURCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.240e-29
Identity = 72/156 (46.15%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H  VDL +E KLD EI+SWLAFA QK+ E+  LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT E+R+ R  ++A  + E  Y  +++ EI + V+ QE L++DV
Sbjct:  333 HVPVDLASEEKLDAEIRSWLAFALQKLDELKVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPVVKAAIARIDAQLGNRASPYTQRASKQSARLNLPAFPTTTIGSFPQTAEIRQARSRFRAGALDEAGYRTAMRAEIERSVREQESLELDV 488          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_BURCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.240e-29
Identity = 72/156 (46.15%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H  VDL +E KLD EI+SWLAFA QK+ E+  LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT E+R+ R  ++A  + E  Y  +++ EI + V+ QE L++DV
Sbjct:  333 HVPVDLASEEKLDAEIRSWLAFALQKLDELKVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPVVKAAIARIDAQLGNRASPYTQRASKQSARLNLPAFPTTTIGSFPQTAEIRQARSRFRAGALDEAGYRTAMRAEIERSVREQESLELDV 488          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_SACD2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metE PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.619e-29
Identity = 72/160 (45.00%), Postives = 103/160 (64.38%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSA------NAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            HT VDL +E  LD +IK+WLAFA QK+ E+N L +AL    D G  S       NA A A+RK+S +V N +VQ     +  S   R +  + R++ QQ K NLP LPTTTIGSFPQT E+R+ R+ +K+ +IS+++Y  +++ EI   ++LQE++ IDV
Sbjct:  334 HTPVDLDSEEALDADIKNWLAFAKQKLQELNILQRAL----DNGETSVAEALVHNAGAIAARKASAKVNNAKVQSLVNNISPSLSERESPFATRIEKQQAKYNLPTLPTTTIGSFPQTSEIRKNRKAFKSGEISQQQYDRTLRAEIAHAIELQEKIGIDV 489          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_PSEU5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=metE PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.619e-29
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKD---EGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H+ VDL  E++LD+E+KSWLAFA QK  EV  LA+A+   +D   +   + + A QA+R  SPR+    VQ   AA++  D RR +  + R++ Q+ +L LP  PTTTIGSFPQT  +R  R+ YK  ++S  +Y  +++ EI   V +QE++ +DV
Sbjct:  335 HSPVDLEREDRLDEEVKSWLAFAVQKCSEVATLARAIDDPQDAEVQAALARSRAVQAARAQSPRIHKPAVQARLAAIEAKDSRRTSVFATRIELQRARLQLPAFPTTTIGSFPQTPAIRLARQAYKQGRLSLGDYTEAMQAEIRHAVAVQEQIGLDV 491          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_BORA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella avium (strain 197N) GN=metE PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.619e-29
Identity = 70/157 (44.59%), Postives = 103/157 (65.61%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGF---FSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H  VDL+ E +LD E+KSWL+FA+QK+ E++ L +AL G   +      +A  AA A+R+SSPR+ N  V +  AA +     RA   + R+  QQ +LNLP  PTTTIGSFPQT E+R +RR++K+  +S+  Y A I++EI  V++ QE++ +DV
Sbjct:  335 HVPVDLLAETELDAELKSWLSFASQKLDELSLLGRALDGDSSQAVQEGLAAQRAALAARRSSPRIHNPAVGRRMAASEQVSRDRAP-FAERIRQQQARLNLPPFPTTTIGSFPQTAEIRGLRRDWKSGALSDSTYEALIRKEIEAVIRFQEKVGLDV 490          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_BURCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.114e-29
Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H  VDL +E KLD EI+SWLAFA QK+ E+  LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      R +  + R   Q  +LNLP  PTTTIGSFPQT E+R+ R  +KA  + E  Y  +++ EI + V+ QE L++DV
Sbjct:  333 HVPVDLASEEKLDAEIRSWLAFALQKLDELKVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPAVKAAIARIDARLGNRTSPYTQRASKQSARLNLPAFPTTTIGSFPQTAEIRQARSRFKAGALDEAGYRKAMQAEIERSVREQESLELDV 488          
BLAST of CX307825 vs. ExPASy Swiss-Prot
Match: METE_BURS3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia sp. (strain 383) GN=metE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.761e-29
Identity = 72/156 (46.15%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 HTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE--GFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEELDIDV 463
            H  VDL +E KLD EI+SWLAFA QK+ E+  LA AL   +D+     +ANAAA  SR+ SPRV N  V+ A A +      R +  + R   Q  +LNLP  PTTTIGSFPQT E+R+ R ++KA  + E  Y  +++ EI + V+ QE L++DV
Sbjct:  333 HVPVDLASEEKLDAEIRSWLAFALQKLDELKVLATALNEGRDKVADALAANAAAIHSRRHSPRVNNPAVKAAIARIDAQLGNRVSPYTQRAPKQSARLNLPAFPTTTIGSFPQTGEIRQARSQFKAGTLDEAGYRKAMQAEIERSVREQESLELDV 488          
The following BLAST results are available for this feature:
BLAST of CX307825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
METE_PSEAB5.564e-3045.865-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA85.564e-3045.865-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCM7.267e-3046.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCH1.240e-2946.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCA1.240e-2946.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SACD21.619e-2945.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEU51.619e-2942.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORA11.619e-2944.595-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCC2.114e-2946.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURS32.761e-2946.155-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC20002D08SK OF2 Citrus clementina cDNA clone C20002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307825 ID=CX307825; Name=CX307825; organism=Citrus clementina; type=EST; length=464bp
TCACACTGCTGTTGATCTTGTTAATGAGAACAAACTCGACGATGAAATCA
AGTCATGGCTGGCATTTGCTGCCCAGAAAGTTGTTGAAGTGAATGCATTG
GCCAAGGCTTTGGCTGGCCAAAAGGATGAGGGATTCTTCTCTGCCAATGC
TGCAGCTCAGGCTTCAAGAAAGTCCTCCCCGAGAGTGACCAATGAGAGAG
TTCAAAAGGCTGCTGCTGCTTTGAAGGGATCAGACCACAGACGTGCTACA
AACGTTAGTGCTAGATTGGATGCTCAACAGAAGAAGCTCAATCTTCCAAT
CCTCCCAACCACCACAATTGGATCCTTCCCACAAACCATTGAACTTAGGA
GAGTCCGCCGTGAATACAAGGCTAAGAAGATTTCTGAGGAAGAATATGTT
GCTTCCATCAAGGAGGAAATCAACAAGGTTGTCAAACTCCAAGAAGAGCT
TGATATTGATGTCC
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