CX307832

Overview
NameCX307832
Unique NameCX307832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_BACV8 (Translation initiation factor IF-2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=infB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.741e-22
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LNG P AGD F V+D+   AR+ A        N+R   +   G                     H+LNVI+K DV GS+EA+ ++L  L  + V +  + +  G IS SDV LA AS AII+GF V+   S    A+ +GV+IR Y VIYD I++++ AMEG
Sbjct:  745 LNGAPAAGDTFHVIDTEQEARDIA--------NKREQLQREQGLRTQKLLTLDEVGRRLALGDFHELNVIVKGDVDGSVEALSDSLIKLSTEQVQVNVIHKGVGQISESDVTLAAASDAIIVGFQVRPSSSAGKLAEQEGVDIRKYSVIYDAIEEVKAAMEG 898          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SILPO (Translation initiation factor IF-2 OS=Silicibacter pomeroyi GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LNG P AGD   V  +   ARE AE RA   +++R +A A                       + +L +++K DVQGS EA+ +A++ +  D V ++ L    G I+ +DV LA AS A I+GFNV+A  S +  A+ KGVEIR Y VIYDL+DD++ A  G
Sbjct:  575 LNGTPEAGDVLNVTSTEAQAREIAEYRAQVAKDKRAAAGAATTLEQLMAKAKADEN-------VAELPILVKADVQGSAEAIVQAMEKIGNDEVRVRVLHSGVGAITETDVGLAEASGAPIMGFNVRANASARNTANQKGVEIRYYSVIYDLVDDVKAAASG 729          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_RICFE (Translation initiation factor IF-2 OS=Rickettsia felis GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LN VP AGD+F VV +   A++ AE R    + ++IS                          + +L +I+K DVQGS+EA+  +L  LP D + L+ L    G I+ SDV LA AS AII+GFNV+A  +  T A+ + V+IR Y +IY+LIDD++  M G
Sbjct:  570 LNEVPFAGDKFNVVQNEKQAKDIAEYRMRLAKEKKISIAPRSSLEDLFLKASGNSK-------IKELPLIIKGDVQGSVEAISGSLLKLPSDEIKLRILHSGVGPITESDVSLAHASSAIIVGFNVRAGANALTAAEKEKVDIRYYSIIYNLIDDVKAIMSG 724          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_RHOS5 (Translation initiation factor IF-2 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LNG P AGD   VV++   ARE A+ R  + R++R +A A                       + +L V++K DVQGS EA+ +AL+ +  + V ++ L    G I+ +D+ LA AS+A ++GFNV+A  S +  A+ K VEIR Y VIYDL+DD++ A  G
Sbjct:  578 LNGTPEAGDVLNVVETEAQAREIADYREKAARDKRAAAGAATTLEQLMAKAKADAD-------VAELPVVIKADVQGSAEAIVQALEKVGNEEVRVRVLHYGVGAITETDIGLAEASQAAVIGFNVRANASARQAANQKSVEIRYYSVIYDLVDDVKKAASG 732          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_RHIME (Translation initiation factor IF-2 OS=Rhizobium meliloti GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 61/162 (37.65%), Postives = 88/162 (54.32%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            L+G P AGD F VV+S   ARE +E R    R + ++ ++G                      + +  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  ++  G+EIR Y +IYDL+DD++ AM G
Sbjct:  629 LSGTPAAGDRFAVVESESRAREISEYRQRLAREKAVARQSGSRGSLEQMMTQLQTSG------VKEFPLVIKGDVQGSIEAISGALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDASERAGIEIRYYNIIYDLVDDVKAAMSG 784          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_PEDPA (Translation initiation factor IF-2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LNGVP AGD F V D    AR   E RA   + E                             + ++++I+K DVQGS+EA+ ++LQ +  + V +  + +A G I+ SDV LA AS AII+GFNV+     K  AD++ V+IRL+RVIY+ ID++ +AM+G
Sbjct:  661 LNGVPEAGDRFVVFDDEKSARAAGEERAKRAQMEERKRS--------NHVTLDNLFDSLKEGEMKKVDIIIKADVQGSVEALADSLQKIEVEGVRVNIIHKAVGAINESDVTLAAASNAIIIGFNVRPTAQAKQMADSEDVDIRLHRVIYNAIDEVESAMKG 814          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_PARDP (Translation initiation factor IF-2 OS=Paracoccus denitrificans (strain Pd 1222) GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 62/162 (38.27%), Postives = 91/162 (56.17%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LNG P AGD   VV +   ARE A+ R  + +++R +A A                       + +L V++K DVQGS EA+ +AL+ +  D V ++ L    G I+ SD+ LA AS+A ++GFNV+A    +  A+ KGVEIR Y +IYDL+DD++ A  G
Sbjct:  589 LNGTPEAGDVLNVVSTEAQAREIADYRIQAAKDKRAAAGAA-------ITLDQMLAKAKADENVAELPVVIKADVQGSAEAIVQALEKIGNDEVRVRVLHYGVGAITESDIGLAEASQAPVIGFNVRANAPARNAANQKGVEIRYYSIIYDLVDDIKAAASG 743          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_LACRJ (Translation initiation factor IF-2 OS=Lactobacillus reuteri (strain JCM 1112) GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAR---EKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LN VP AGD F V D    AR   E+   RA     ++ S    D                     +  L +I+K DVQGS+EA+ ++LQ +  D V +  + QA G I+ SDV LA AS A+I+GFNV+     KT AD+  ++IRL+RVIYD I+++ +AM+G
Sbjct:  495 LNEVPEAGDRFVVFDDEKTARAAGEERAKRAMDKERQKTSHVTLDNLFATMKKGQ-----------MKTLPIIIKADVQGSVEALSQSLQKIKVDGVRVDIIHQAVGAINQSDVTLAEASNAVIIGFNVRPTAVAKTLADSNSIDIRLHRVIYDAIEEVEDAMKG 648          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_LACRD (Translation initiation factor IF-2 OS=Lactobacillus reuteri (strain DSM 20016) GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAR---EKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LN VP AGD F V D    AR   E+   RA     ++ S    D                     +  L +I+K DVQGS+EA+ ++LQ +  D V +  + QA G I+ SDV LA AS A+I+GFNV+     KT AD+  ++IRL+RVIYD I+++ +AM+G
Sbjct:  495 LNEVPEAGDRFVVFDDEKTARAAGEERAKRAMDKERQKTSHVTLDNLFATMKKGQ-----------MKTLPIIIKADVQGSVEALSQSLQKIKVDGVRVDIIHQAVGAINQSDVTLAEASNAVIIGFNVRPTAVAKTLADSNSIDIRLHRVIYDAIEEVEDAMKG 648          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_GEOUR (Translation initiation factor IF-2 OS=Geobacter uraniireducens (strain Rf4) GN=infB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    9 GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            GVP AGD F  +     A+E A  R   LR   ++                          +  LNVI+K DVQGS+EAV E+L+ L  D + L  +  + G I+ +DV+LA AS AIILGFNV+     +  A+ +GV++RLY +IYD +DD++ AMEG
Sbjct:  626 GVPDAGDVFVALADEKQAKEIASLRQQKLRETELAKHT--------KLSLEQLYEKIQMGEVKDLNVIVKGDVQGSVEAVAESLRKLSTDAIRLNVIHASVGAITETDVNLATASNAIILGFNVRPEVKAQALAEKEGVDVRLYNIIYDAVDDIKKAMEG 777          
The following BLAST results are available for this feature:
BLAST of CX307832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_BACV83.741e-2238.89Translation initiation factor IF-2 OS=Bacteroides ... [more]
IF2_SILPO4.886e-2239.51Translation initiation factor IF-2 OS=Silicibacter... [more]
IF2_RICFE4.886e-2238.89Translation initiation factor IF-2 OS=Rickettsia f... [more]
IF2_RHOS54.886e-2238.27Translation initiation factor IF-2 OS=Rhodobacter ... [more]
IF2_RHIME4.886e-2237.65Translation initiation factor IF-2 OS=Rhizobium me... [more]
IF2_PEDPA4.886e-2238.27Translation initiation factor IF-2 OS=Pediococcus ... [more]
IF2_PARDP4.886e-2238.27Translation initiation factor IF-2 OS=Paracoccus d... [more]
IF2_LACRJ4.886e-2238.79Translation initiation factor IF-2 OS=Lactobacillu... [more]
IF2_LACRD4.886e-2238.79Translation initiation factor IF-2 OS=Lactobacillu... [more]
IF2_GEOUR4.886e-2238.75Translation initiation factor IF-2 OS=Geobacter ur... [more]

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Properties
Property NameValue
Genbank descriptionC20002E04SK OF2 Citrus clementina cDNA clone C20002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307832 ID=CX307832; Name=CX307832; organism=Citrus clementina; type=EST; length=488bp
GGCTGAATGGAGTTCCGATTGCTGGTGATGAATTTGAGGTCGTTGATTCA
CTCGATGTAGCACGTGAAAAGGCAGAAGCACGTGCTTTTTCATTGCGTAA
TGAGCGAATATCAGCTAAGGCTGGAGATGGGAAGGTCACACTTTCTTCTT
TAGCTTCTGCAGTTTCAGCAGGGAAGCTGTCTGGATTATACTTGCACCAG
CTGAATGTTATTATGAAGGTTGACGTTCAGGGATCCATTGAGGCTGTCAG
AGAAGCCCTGCAAGTGCTGCCACAAGATAATGTCACTTTGAAGTTCCTCT
TGCAAGCGACAGGGGATATCAGTGCTAGTGATGTTGATCTTGCGGTTGCT
AGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGCACCAGGATCTGTTAA
GACTTATGCAGATAACAAAGGTGTTGAGATTCGACTATACAGAGTTATCT
ATGATCTCATTGATGATATGAGAAATGCAATGGAAGGA
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