CX307832
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_BACV8 (Translation initiation factor IF-2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=infB PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 3.741e-22 Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LNG P AGD F V+D+ AR+ A N+R + G H+LNVI+K DV GS+EA+ ++L L + V + + + G IS SDV LA AS AII+GF V+ S A+ +GV+IR Y VIYD I++++ AMEG Sbjct: 745 LNGAPAAGDTFHVIDTEQEARDIA--------NKREQLQREQGLRTQKLLTLDEVGRRLALGDFHELNVIVKGDVDGSVEALSDSLIKLSTEQVQVNVIHKGVGQISESDVTLAAASDAIIVGFQVRPSSSAGKLAEQEGVDIRKYSVIYDAIEEVKAAMEG 898
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SILPO (Translation initiation factor IF-2 OS=Silicibacter pomeroyi GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LNG P AGD V + ARE AE RA +++R +A A + +L +++K DVQGS EA+ +A++ + D V ++ L G I+ +DV LA AS A I+GFNV+A S + A+ KGVEIR Y VIYDL+DD++ A G Sbjct: 575 LNGTPEAGDVLNVTSTEAQAREIAEYRAQVAKDKRAAAGAATTLEQLMAKAKADEN-------VAELPILVKADVQGSAEAIVQAMEKIGNDEVRVRVLHSGVGAITETDVGLAEASGAPIMGFNVRANASARNTANQKGVEIRYYSVIYDLVDDVKAAASG 729
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_RICFE (Translation initiation factor IF-2 OS=Rickettsia felis GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LN VP AGD+F VV + A++ AE R + ++IS + +L +I+K DVQGS+EA+ +L LP D + L+ L G I+ SDV LA AS AII+GFNV+A + T A+ + V+IR Y +IY+LIDD++ M G Sbjct: 570 LNEVPFAGDKFNVVQNEKQAKDIAEYRMRLAKEKKISIAPRSSLEDLFLKASGNSK-------IKELPLIIKGDVQGSVEAISGSLLKLPSDEIKLRILHSGVGPITESDVSLAHASSAIIVGFNVRAGANALTAAEKEKVDIRYYSIIYNLIDDVKAIMSG 724
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_RHOS5 (Translation initiation factor IF-2 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LNG P AGD VV++ ARE A+ R + R++R +A A + +L V++K DVQGS EA+ +AL+ + + V ++ L G I+ +D+ LA AS+A ++GFNV+A S + A+ K VEIR Y VIYDL+DD++ A G Sbjct: 578 LNGTPEAGDVLNVVETEAQAREIADYREKAARDKRAAAGAATTLEQLMAKAKADAD-------VAELPVVIKADVQGSAEAIVQALEKVGNEEVRVRVLHYGVGAITETDIGLAEASQAAVIGFNVRANASARQAANQKSVEIRYYSVIYDLVDDVKKAASG 732
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_RHIME (Translation initiation factor IF-2 OS=Rhizobium meliloti GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 61/162 (37.65%), Postives = 88/162 (54.32%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 L+G P AGD F VV+S ARE +E R R + ++ ++G + + +++K DVQGSIEA+ AL L D V + + G I+ SDV LA AS A I+GFNV+A + ++ G+EIR Y +IYDL+DD++ AM G Sbjct: 629 LSGTPAAGDRFAVVESESRAREISEYRQRLAREKAVARQSGSRGSLEQMMTQLQTSG------VKEFPLVIKGDVQGSIEAISGALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDASERAGIEIRYYNIIYDLVDDVKAAMSG 784
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_PEDPA (Translation initiation factor IF-2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LNGVP AGD F V D AR E RA + E + ++++I+K DVQGS+EA+ ++LQ + + V + + +A G I+ SDV LA AS AII+GFNV+ K AD++ V+IRL+RVIY+ ID++ +AM+G Sbjct: 661 LNGVPEAGDRFVVFDDEKSARAAGEERAKRAQMEERKRS--------NHVTLDNLFDSLKEGEMKKVDIIIKADVQGSVEALADSLQKIEVEGVRVNIIHKAVGAINESDVTLAAASNAIIIGFNVRPTAQAKQMADSEDVDIRLHRVIYNAIDEVESAMKG 814
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_PARDP (Translation initiation factor IF-2 OS=Paracoccus denitrificans (strain Pd 1222) GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 62/162 (38.27%), Postives = 91/162 (56.17%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LNG P AGD VV + ARE A+ R + +++R +A A + +L V++K DVQGS EA+ +AL+ + D V ++ L G I+ SD+ LA AS+A ++GFNV+A + A+ KGVEIR Y +IYDL+DD++ A G Sbjct: 589 LNGTPEAGDVLNVVSTEAQAREIADYRIQAAKDKRAAAGAA-------ITLDQMLAKAKADENVAELPVVIKADVQGSAEAIVQALEKIGNDEVRVRVLHYGVGAITESDIGLAEASQAPVIGFNVRANAPARNAANQKGVEIRYYSIIYDLVDDIKAAASG 743
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_LACRJ (Translation initiation factor IF-2 OS=Lactobacillus reuteri (strain JCM 1112) GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAR---EKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LN VP AGD F V D AR E+ RA ++ S D + L +I+K DVQGS+EA+ ++LQ + D V + + QA G I+ SDV LA AS A+I+GFNV+ KT AD+ ++IRL+RVIYD I+++ +AM+G Sbjct: 495 LNEVPEAGDRFVVFDDEKTARAAGEERAKRAMDKERQKTSHVTLDNLFATMKKGQ-----------MKTLPIIIKADVQGSVEALSQSLQKIKVDGVRVDIIHQAVGAINQSDVTLAEASNAVIIGFNVRPTAVAKTLADSNSIDIRLHRVIYDAIEEVEDAMKG 648
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_LACRD (Translation initiation factor IF-2 OS=Lactobacillus reuteri (strain DSM 20016) GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 64/165 (38.79%), Postives = 90/165 (54.55%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAR---EKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LN VP AGD F V D AR E+ RA ++ S D + L +I+K DVQGS+EA+ ++LQ + D V + + QA G I+ SDV LA AS A+I+GFNV+ KT AD+ ++IRL+RVIYD I+++ +AM+G Sbjct: 495 LNEVPEAGDRFVVFDDEKTARAAGEERAKRAMDKERQKTSHVTLDNLFATMKKGQ-----------MKTLPIIIKADVQGSVEALSQSLQKIKVDGVRVDIIHQAVGAINQSDVTLAEASNAVIIGFNVRPTAVAKTLADSNSIDIRLHRVIYDAIEEVEDAMKG 648
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_GEOUR (Translation initiation factor IF-2 OS=Geobacter uraniireducens (strain Rf4) GN=infB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 9 GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 GVP AGD F + A+E A R LR ++ + LNVI+K DVQGS+EAV E+L+ L D + L + + G I+ +DV+LA AS AIILGFNV+ + A+ +GV++RLY +IYD +DD++ AMEG Sbjct: 626 GVPDAGDVFVALADEKQAKEIASLRQQKLRETELAKHT--------KLSLEQLYEKIQMGEVKDLNVIVKGDVQGSVEAVAESLRKLSTDAIRLNVIHASVGAITETDVNLATASNAIILGFNVRPEVKAQALAEKEGVDVRLYNIIYDAVDDIKKAMEG 777 The following BLAST results are available for this feature:
BLAST of CX307832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307832 ID=CX307832; Name=CX307832; organism=Citrus clementina; type=EST; length=488bpback to top |