CX307837

Overview
NameCX307837
Unique NameCX307837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.004e-17
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  177 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGEL 419
            P ML+MKG P+ P+CGFS   V +L  +N+  S+ +I  D E++  +K +S WPT+PQ+++ GE IGG DII  +  S EL
Sbjct:  144 PCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSSWPTYPQLYVSGELIGGLDIIKELEASKEL 224          

HSP 2 Score: 86.6557 bits (213), Expect = 8.741e-17
Identity = 39/99 (39.39%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  141 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKG 437
            L+E ++    +  VML+MKG  +  +CGFS   + +L +  +     +ILED E++  +KA+S+WPT+PQ+++KGE +GG DI+  + ++GEL   LKG
Sbjct:  234 LEERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGIEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILKG 332          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GRS12_ORYSJ (Monothiol glutaredoxin-S12, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXS12 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 38/101 (37.62%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  141 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE---LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 434
            L++++++ VK+N V+ ++KG    PQCGFS   V +L ++ V     ++L++     L+  +K +S+WPTFPQ+F+ GE +GG DI+ +M + GEL    K
Sbjct:  184 LEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAALFK 284          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX4_YEAST (Monothiol glutaredoxin-4 OS=Saccharomyces cerevisiae GN=GRX4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.796e-15
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  105 RPTSKVDASGLSLKEVVEQDVKEN----------PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDII 392
            + TS  ++SG S  E  E + + N          PVML+MKG P  P+CGFS   V +L  + +     +IL D  ++ ++K FS WPTFPQ++I GEF GG DII
Sbjct:  123 KSTSDEESSGSSDDEEDETEEEINARLVKLVQAAPVMLFMKGSPSEPKCGFSRQLVGILREHQIRFGFFDILRDENVRQSLKKFSDWPTFPQLYINGEFQGGLDII 228          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX3_YEAST (Monothiol glutaredoxin-3 OS=Saccharomyces cerevisiae GN=GRX3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.181e-15
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   78 NDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDII 392
            +D D  E+     +++A    L       V   PVML+MKG P  P+CGFS   V +L  + V     +IL D  ++  +K FS WPTFPQ++I GEF GG DII
Sbjct:  171 DDDDEEEEEETEEQINARLTKL-------VNAAPVMLFMKGSPSEPKCGFSRQLVGILREHQVRFGFFDILRDESVRQNLKKFSEWPTFPQLYINGEFQGGLDII 268          
The following BLAST results are available for this feature:
BLAST of CX307837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GLRX3_BOVIN3.004e-1745.68Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
GRS12_ORYSJ3.322e-1637.62Monothiol glutaredoxin-S12, chloroplastic OS=Oryza... [more]
GLRX4_YEAST4.796e-1541.51Monothiol glutaredoxin-4 OS=Saccharomyces cerevisi... [more]
GLRX3_YEAST8.181e-1540.95Monothiol glutaredoxin-3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC20002E11SK OF2 Citrus clementina cDNA clone C20002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307837 ID=CX307837; Name=CX307837; organism=Citrus clementina; type=EST; length=564bp
ATCCATCTGCGCGTTCCTCTAGAATTGTATCCGGATCCTTGTACCGCAAT
GGGATGAAATACTCTACTGATGTGCCCAATGATCCTGACACACATGAGGA
TTTTAGACCTACTAGCAAGGTCGACGCCTCTGGCCTTTCTTTAAAGGAAG
TTGTTGAGCAGGATGTCAAAGAAAACCCTGTGATGCTTTACATGAAGGGG
GTTCCTGAATTTCCTCAATGTGGTTTCAGTTCGCTGGCAGTGCGTGTACT
GGGCGCATATAATGTTCCAATAAGTGCTAGAAATATTCTGGAAGATCCAG
AGCTTAAAAGTGCAGTAAAAGCTTTCAGCCATTGGCCTACGTTTCCTCAG
ATTTTTATCAAGGGTGAATTCATTGGAGGTTCAGATATTATTCTAAATAT
GCACCAGTCTGGTGAACTAAAGGAGAAGCTCAAAGGTATTGCATCCAACC
AGAAGTCAGATTGATTTCCTGCTGTGGAATGTAAAGCGAGGAATAGTCTA
TCAGGTCTTTTACCATTTTCTGAGTTTCTTGTTGCTATAAAGCGATGGGA
TAAGTCCTTTTTTC
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