CX307840

Overview
NameCX307840
Unique NameCX307840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BUCCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Cinara cedri GN=metE PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.442e-38
Identity = 77/123 (62.60%), Postives = 96/123 (78.05%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFR 371
            VTIL WSF R D  + + C QIA++++DEV DLE +GIN+IQIDE ALREGLPLR  E   YL WAV SF+I + GV+++TQIHTHMCY  FNDI+ +I+D+DADVITIE SRSD +LL  F+
Sbjct:  559 VTILCWSFPREDISKEDICNQIAISLRDEVLDLENSGINIIQIDEPALREGLPLRTHEWNNYLRWAVKSFKICSSGVKNSTQIHTHMCYCEFNDIMPAIVDLDADVITIETSRSDMELLEFFK 681
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_PSEF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 78/123 (63.41%), Postives = 91/123 (73.98%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFR 371
            VT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR+++   YLDWA   FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRSD +LL  F+
Sbjct:  563 VTMLMWSFPREDVSREVQARQLALAIRDEVLDLEAAGIRIVQIDEAAFREGLPLRRAQWQHYLDWATEVFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLDAFK 685
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_PSEA7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 76/122 (62.30%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSF R D  R     Q+ALA++DEV DLE+AGI ++QIDEAA REGLPLR+++   YL+WA  +FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRSD +LL  F
Sbjct:  563 VTMLMWSFPREDVSREVQARQLALALRDEVSDLEQAGIRIVQIDEAAFREGLPLRRADWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAF 684
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BURPS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSFVR+DQPR  T  QIALA++ E  DLEKAGI +IQIDE ALREGLPL+  E A YLDWAV +F I   GV D TQIHTHMCYS F DI+ SI  +DADVI+IE +RS+ +LL  F
Sbjct:  560 VTMLQWSFVRDDQPRATTALQIALALRQETLDLEKAGIGMIQIDEPALREGLPLKARERAAYLDWAVRAFGIAASGVADDTQIHTHMCYSEFGDILPSIAALDADVISIETTRSNMELLDAF 681
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BURP6 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 668) GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSFVR+DQPR  T  QIALA++ E  DLEKAGI +IQIDE ALREGLPL+  E A YLDWAV +F I   GV D TQIHTHMCYS F DI+ SI  +DADVI+IE +RS+ +LL  F
Sbjct:  560 VTMLQWSFVRDDQPRATTALQIALALRQETLDLEKAGIGMIQIDEPALREGLPLKARERAAYLDWAVRAFGIAASGVADDTQIHTHMCYSEFGDILPSIAALDADVISIETTRSNMELLDAF 681
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BURP1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSFVR+DQPR  T  QIALA++ E  DLEKAGI +IQIDE ALREGLPL+  E A YLDWAV +F I   GV D TQIHTHMCYS F DI+ SI  +DADVI+IE +RS+ +LL  F
Sbjct:  560 VTMLQWSFVRDDQPRATTALQIALALRQETLDLEKAGIGMIQIDEPALREGLPLKARERAAYLDWAVRAFGIAASGVADDTQIHTHMCYSEFGDILPSIAALDADVISIETTRSNMELLDAF 681
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BURP0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSFVR+DQPR  T  QIALA++ E  DLEKAGI +IQIDE ALREGLPL+  E A YLDWAV +F I   GV D TQIHTHMCYS F DI+ SI  +DADVI+IE +RS+ +LL  F
Sbjct:  560 VTMLQWSFVRDDQPRATTALQIALALRQETLDLEKAGIGMIQIDEPALREGLPLKARERAAYLDWAVRAFGIAASGVADDTQIHTHMCYSEFGDILPSIAALDADVISIETTRSNMELLDAF 681
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BURMS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain SAVP1) GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSFVR+DQPR  T  QIALA++ E  DLEKAGI +IQIDE ALREGLPL+  E A YLDWAV +F I   GV D TQIHTHMCYS F DI+ SI  +DADVI+IE +RS+ +LL  F
Sbjct:  560 VTMLQWSFVRDDQPRATTALQIALALRQETLDLEKAGIGMIQIDEPALREGLPLKARERAAYLDWAVRAFGIAASGVADDTQIHTHMCYSEFGDILPSIAALDADVISIETTRSNMELLDAF 681
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BURMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSFVR+DQPR  T  QIALA++ E  DLEKAGI +IQIDE ALREGLPL+  E A YLDWAV +F I   GV D TQIHTHMCYS F DI+ SI  +DADVI+IE +RS+ +LL  F
Sbjct:  560 VTMLQWSFVRDDQPRATTALQIALALRQETLDLEKAGIGMIQIDEPALREGLPLKARERAAYLDWAVRAFGIAASGVADDTQIHTHMCYSEFGDILPSIAALDADVISIETTRSNMELLDAF 681
[Close]
BLAST of CX307840 vs. ExPASy Swiss-Prot
Match: METE_BURM9 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=metE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.884e-38
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 3 
Query:    3 VTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 368
            VT+L WSFVR+DQPR  T  QIALA++ E  DLEKAGI +IQIDE ALREGLPL+  E A YLDWAV +F I   GV D TQIHTHMCYS F DI+ SI  +DADVI+IE +RS+ +LL  F
Sbjct:  560 VTMLQWSFVRDDQPRATTALQIALALRQETLDLEKAGIGMIQIDEPALREGLPLKARERAAYLDWAVRAFGIAASGVADDTQIHTHMCYSEFGDILPSIAALDADVISIETTRSNMELLDAF 681
The following BLAST results are available for this feature:
BLAST of CX307840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_BUCCC1.442e-3862.605-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEF51.884e-3863.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA71.884e-3862.305-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPS1.884e-3864.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP61.884e-3864.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP11.884e-3864.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP01.884e-3864.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURMS1.884e-3864.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURMA1.884e-3864.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURM91.884e-3864.755-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC20002F02SK OF2 Citrus clementina cDNA clone C20002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307840 ID=CX307840; Name=CX307840; organism=Citrus clementina; type=EST; length=393bp
CTGTCACCATTCTCAACTGGTCCTTTGTCAGAAATGACCAGCCCAGACAT
GAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCGAGGATCT
TGAGAAGGCAGGCATTAACGTTATTCAAATTGATGAGGCTGCCTTGAGGG
AAGGATTGCCTCTTAGGAAATCTGAGCATGCTTTCTACTTGGACTGGGCA
GTCCACTCCTTCAGAATCACCAACTGTGGTGTCCAGGACACTACCCAGAT
CCACACCCACATGTGCTACTCCAACTTCAACGACATTATCCACTCAATTA
TCGACATGGATGCTGATGTGATCACCATTGAGAACTCTCGTTCTGATGAG
AAGCTCCTGTCTGTCTTCCGTGAGGGAGTCAAGTATGGTGCTG
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