CX307842
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.872e-31 Identity = 74/161 (45.96%), Postives = 95/161 (59.01%), Query Frame = 3 Query: 36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 515 M RPARCYR+IK PY + + G P +I +D+G F LV+ E+ + +ALEAAR +KY+ K+ G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQV+ V K + H +EALRRA K P Sbjct: 1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKLP 161
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 7.115e-31 Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 3 Query: 45 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 515 RPARCYR+IK PY + + G P +I +D+G FP L+ E+ + +ALEAAR +KY+ K+ G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQ+L K + H +EA RRA K P Sbjct: 4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLP 161
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 9.293e-31 Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 3 Query: 45 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 515 RPARCY++IK PY + + G P +I +D+G FP LV E+ + +ALEAAR KY++K+ G ++LR+ P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQV+ K + H +EALRRA K P Sbjct: 4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLP 161
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 9.293e-31 Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 3 Query: 36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 530 M RP++CYR+I Y + ++ R VP PK+ Y G KG D FP VHLV + + ALE+ARI NKY G+ + ++RV+P VLR NKM S AGADR+ GMR +FGK GT ARV GQ ++++ N +HA+EALRR K P + KI Sbjct: 1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCKI 162
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.214e-30 Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 3 Query: 45 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 515 RP RCYR + PY + + +GVP PK+ + +G EFP V+LV+ + ALEAAR+A NKY+ K G+ + ++RV+P +LR +KM + AGADR+ GMR AFGKP GT ARV GQ +L+V A+EALRRA K P Sbjct: 5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLP 158
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30 Identity = 72/158 (45.57%), Postives = 92/158 (58.23%), Query Frame = 3 Query: 45 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGV-DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 515 RPARCY++IK PY + + G P +I +D+G F LV E+ + +ALEAAR +KY+ K+ G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQVL K + H +EALRRA K P Sbjct: 4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLP 161
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30 Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = 3 Query: 36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 530 M R+PAR +R+++ +PY ++ + G P ++R++D+G K +FP + LV+ E + ALEAAR+ NKY+++ AG + L++R+ P H+LR +KM AGADR+ GMR AFGKP G ARV G ++SV K + A+EALRRA K P KI Sbjct: 1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKI 161
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 4.612e-30 Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = 3 Query: 45 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 515 RPARCYR+IK PY + + G P +I +D+G+ F LV E+ + +ALEAAR KY++K+ G ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G ARV GQV+ + + H +EALRRA K P Sbjct: 4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLP 161
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28 Identity = 69/165 (41.82%), Postives = 93/165 (56.36%), Query Frame = 3 Query: 36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 530 M RPARCYR I+ + Y + + R VP PK+ Y +G EFP V LVS + ALE++RIA NKY+ G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ A+EALRR K P KI Sbjct: 1 MALRPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKI 162
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28 Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 3 Query: 36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 530 M +PAR Y +I Y + F GVP PKI + G +KK +FP + LV+ E + ALEAAR++ N+ M + AG D F+L+V +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV V++ R ++++ + ALR+A K P K+ Sbjct: 1 MVTKPARMYSRITGPAYTRKEFMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLPTPCKV 162 The following BLAST results are available for this feature:
BLAST of CX307842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307842 ID=CX307842; Name=CX307842; organism=Citrus clementina; type=EST; length=532bpback to top |