CX307842

Overview
NameCX307842
Unique NameCX307842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA 500
            M  +PA  YR I    Y +  +  G+P  K+  Y +G  +   +++   + L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRA 156          
BLAST of CX307842 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 3
Query:   57 CYRQIKNKPYPK------SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSLHAQEALRRAKFKFPGRQK 527
            CYR+++  PY +        +  G     +R++ +G   +   E+ +   LV+ E   +   A+EA R+  NKY+    GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +   +  L+ A+ K P R +
Sbjct:    9 CYRKLE-VPYTRVSRSKNKNYIPGAKPTMVRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172          
The following BLAST results are available for this feature:
BLAST of CX307842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD2.147e-1933.3350S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ7.903e-1428.4850S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC20002F04SK OF2 Citrus clementina cDNA clone C20002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307842 ID=CX307842; Name=CX307842; organism=Citrus clementina; type=EST; length=532bp
GGTTTAGTTGCTGAATACCTACCAGGGCTTTCGCCATGGGAAGAAGACCT
GCTAGGTGTTATCGCCAGATAAAAAATAAGCCGTATCCGAAATCACGCTT
TTGTCGTGGTGTGCCTGATCCCAAGATCAGGATCTATGATGTTGGAATGA
AGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTGCACTTGGTGTCTTGG
GAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGCTGCTCGAATTGCTTG
CAACAAATATATGGCCAAGTTTGCCGGGAAAGATGCTTTCCATTTGCGAG
TCCGTGTTCACCCATTCCATGTCTTGCGTATCAACAAAATGCTTTCATGT
GCTGGAGCTGATAGGCTTCAAACTGGTATGAGGGGTGCTTTCGGTAAACC
ACAGGGCACTTGTGCTAGAGTTGCCATTGGACAGGTCCTCCTGTCAGTTC
GCTGCAAGGATAGCAATAGTCTTCATGCTCAAGAGGCTCTTCGTCGTGCA
AAGTTCAAGTTTCCTGGTCGCCAAAAAATCAT
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