CX307844

Overview
NameCX307844
Unique NameCX307844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.524e-37
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 TIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQ 349
            TIITG+ +  +   T+ +ATVA  G GF+  D+ F+NTAGP+K  AVALRV  D+S  Y C +  YQD LY HS+RQF+  C I GTVDFI GNA AV Q C I AR+P  GQ
Sbjct:  249 TIITGNLSASNVRRTYNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQ 361          

HSP 2 Score: 50.8322 bits (120), Expect = 4.524e-37
Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1
Query:  352 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            N++TAQ R   +  +G  IQ   I  +SDL     +  TYLGRPW+ +S   ++QS I DL+
Sbjct:  363 NVITAQSRATKDVKSGFSIQNCNITTSSDLDTA--TVKTYLGRPWRRFSTVAVLQSFIGDLV 422          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.913e-37
Identity = 76/138 (55.07%), Postives = 95/138 (68.84%), Query Frame = 2
Query:   11 TIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARK--PNSGQKIWSQPKAGLTLTKTPALSFKNL 418
            T+I+G+R+ +DG TTF+SAT AV G GFLARDITFQNTAGP KHQAVALR  +DLS F+ C M  YQDTLY H+ RQF+  C I GTVDFIFG+   V QNC I A++  PN    I +Q +  +      ++ F N+
Sbjct:  273 TVISGNRSFIDGWTTFRSATFAVSGRGFLARDITFQNTAGPEKHQAVALRSDSDLSVFFRCAMRGYQDTLYTHTMRQFYRECTITGTVDFIFGDGTVVFQNCQILAKRGLPNQKNTITAQGRKDVNQPSGFSIQFSNI 410          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   11 TIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKIWSQPKAGLTLTKTPALSFKNLGLV 427
            T ITG+R+V DG TTF+SAT+AV GEGFLARDI   NTAGP KHQAVALRV AD  A Y C +  YQDTLY HS RQF+  C I GT+D+IFGNAA V Q C+I ++ P  GQ      ++  T  +   +S +N  ++
Sbjct:  298 TFITGNRSVGDGWTTFRSATLAVSGEGFLARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYRECDIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRDTQDEDTGISMQNCSIL 436          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.515e-34
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = 2
Query:    8 RTIITGSRNVV--DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQ 349
            +T+I+ +R+V    G+TT  SATV V  EGF+A+ + F+NTAGP  HQA A+RV  D +  +NC    YQDTLYV++ RQF+ NC+++GTVDFIFG +A V+QN  I  RK + GQ
Sbjct:  336 KTVISYNRSVALSRGTTTSLSATVQVESEGFMAKWMGFKNTAGPMGHQAAAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQ 451          

HSP 2 Score: 47.3654 bits (111), Expect = 1.515e-34
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1
Query:  352 NMVTAQGRT-DPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            N VTA G         GIV+Q  RI     L   + +  TYLGRPWK++S TVIM + + DLI
Sbjct:  453 NTVTADGNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLI 515          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.154e-34
Identity = 74/146 (50.68%), Postives = 96/146 (65.75%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARK--PNSGQKIWSQPK------AGLTLTKTPALSFKN 415
            + +T + GSRN +DG+ TF++AT AV G+GF+A+DI F N AG SKHQAVALR G+D S F+ C    +QDTLY HSNRQF+ +C I GT+DFIFGNAA V Q+C I  R+  PN    I +Q K       G+ + K+    F N
Sbjct:  331 KDKTFVVGSRNFMDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSTITPFGN 476          

HSP 2 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  352 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 540
            N +TAQG+ DPNQNTGI+IQKS I    +      + PTYLGRPWK++S TVIMQS I  L++
Sbjct:  448 NTITAQGKKDPNQNTGIIIQKSTITPFGN----NLTAPTYLGRPWKDFSTTVIMQSDIGALLN 506          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.395e-34
Identity = 64/117 (54.70%), Postives = 80/117 (68.38%), Query Frame = 2
Query:    5 TRTIITGSRNV--VDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQ 349
            T+TIIT  R+V    G+TT  S TV V  EGF+A+ I FQNTAGP  HQAVA RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK + GQ
Sbjct:  331 TQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQ 447          

HSP 2 Score: 45.0542 bits (105), Expect = 7.395e-34
Identity = 26/72 (36.11%), Postives = 37/72 (51.39%), Query Frame = 1
Query:  325 CTKAQFRPKNMVTAQGRTDPNQ-NTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            C K      N VTA G         GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I DLI
Sbjct:  440 CRKGSPGQTNHVTADGNEKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLI 511          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 9.629e-34
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 2
Query:    8 RTIITGSRNVV--DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQ 349
            +T+I+ +R+V    G+TT  S TV V  EGF+A+ I F+NTAGP  HQAVA+RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK N GQ
Sbjct:  343 KTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQ 458          

HSP 2 Score: 45.8246 bits (107), Expect = 9.629e-34
Identity = 30/70 (42.86%), Postives = 37/70 (52.86%), Query Frame = 1
Query:  331 KAQFRPKNMVTAQGRTDP-NQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            K QF   N VTA G         GIV+Q  RI     L   +    +YLGRPWK++S TVI+ S I D+I
Sbjct:  456 KGQF---NTVTADGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVI 522          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.254e-33
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 2
Query:    5 TRTIITGSRNVV--DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQ 349
            T+TIIT  R+V    G+TT  S TV V  EGF+A+ I F+NTAGP  HQAVALRV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK + GQ
Sbjct:  335 TQTIITFDRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPLGHQAVALRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQ 451          

HSP 2 Score: 44.2838 bits (103), Expect = 1.254e-33
Identity = 25/63 (39.68%), Postives = 36/63 (57.14%), Query Frame = 1
Query:  352 NMVTAQGRTD-PNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            N VTA G         GIV+   RI    +L+  + +  +YLGRPWK+++ TVI+ + I DLI
Sbjct:  453 NYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLI 515          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 75/142 (52.82%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   11 TIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKIWSQPKAGLTLTKTPALSFKNLGLVPPP 436
            TIITG R+V  G TT+ SAT  + G  F+A+ ITF+NTAGP+K QAVALR  +DLS FY C +  YQDTL VHS RQF+  C I GTVDFIFGNAAAV QNC I  R+P  GQ      +      +   +S  N  ++P P
Sbjct:  284 TIITGGRSVQGGYTTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAAVFQNCLILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 425          

HSP 2 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  352 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            N++TAQGR DP QNTGI I  SRI    DLK V G+  TY+GRPW ++SRTV++Q+ + +++
Sbjct:  398 NVITAQGRADPFQNTGISIHNSRILPAPDLKPVVGTVKTYMGRPWMKFSRTVVLQTYLDNVV 459          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 75/142 (52.82%), Postives = 89/142 (62.68%), Query Frame = 2
Query:   11 TIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKIWSQPKAGLTLTKTPALSFKNLGLVPPP 436
            TIITG R+V  G TT+ SAT  + G  F+A+ I FQNTAGP+K QAVALR  +DLS FY C +  YQDTL VHS RQF+  C I GTVDFIFGNAA V QNC I  R P  GQ      +    L +   +S  N  ++P P
Sbjct:  288 TIITGGRSVKGGYTTYSSATAGIEGLHFIAKGIAFQNTAGPAKGQAVALRSSSDLSIFYRCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAVVFQNCIILPRLPLKGQANVITAQGRTDLFQNTGISIHNSIIIPAP 429          
The following BLAST results are available for this feature:
BLAST of CX307844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PME30_ARATH4.524e-3754.87Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME44_ARATH6.913e-3755.07Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME12_ARATH8.451e-3554.68Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME4_ARATH1.515e-3451.72Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME3_PHAVU7.154e-3450.68Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME_BRANA7.395e-3454.70Probable pectinesterase/pectinesterase inhibitor O... [more]
PME5_ARATH9.629e-3452.59Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME37_ARATH1.254e-3354.70Probable pectinesterase/pectinesterase inhibitor V... [more]
PME59_ARATH1.594e-3352.82Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME60_ARATH2.082e-3352.82Probable pectinesterase/pectinesterase inhibitor 6... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20002F06SK OF2 Citrus clementina cDNA clone C20002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307844 ID=CX307844; Name=CX307844; organism=Citrus clementina; type=EST; length=541bp
AAGGACTAGAACTATCATCACAGGAAGTAGAAATGTGGTTGATGGAAGCA
CAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATTCTTGGCC
CGAGACATTACATTCCAAAACACAGCAGGCCCCTCAAAGCACCAGGCAGT
GGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGCGATATGT
TAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGTTCTTTGTG
AACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAATGCTGCAGC
CGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTCCGGCCAAA
AAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAAACACCGGCA
TTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTAAAACTGGTT
CAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGAGTACTCGAG
GACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACC
back to top