CX307844

Overview
NameCX307844
Unique NameCX307844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.326e-17
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 2
Query:   41 DGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI 322
            D  +  +S T + + +  + + ITF N+   PSK +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFIFG   ++ Q+C I
Sbjct:  100 DHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVI 202          

HSP 2 Score: 45.8246 bits (107), Expect = 1.326e-17
Identity = 22/60 (36.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:  358 VTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            +TAQGRT+P    G +             LV G+   +LGRPW+ YSR +   S++TD++
Sbjct:  217 ITAQGRTNPYDANGFIFINC---------LVYGTGMAFLGRPWRGYSRVIFYNSNLTDVV 267          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   41 DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSG 346
            DG    +S T+ +    F+ R +T QN  G +  +AVALRV AD +AFY C + +YQDTL   +   +F NC I G  DFI G+A+++ + C +H+  PN+G
Sbjct:  119 DGEDILESPTLTIFASDFVCRFLTIQNKFGTAG-RAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNG 219          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.915e-17
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 2
Query:   53 TFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHA 328
            T+++A+V V    F AR+I+F NTA     G    QAVA R+  D + F  C     QDTL   + R +F  C I G++DFIFGN  ++ ++C++H+
Sbjct:  141 TYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS 237          

HSP 2 Score: 31.187 bits (69), Expect = 4.915e-17
Identity = 18/50 (36.00%), Postives = 23/50 (46.00%), Query Frame = 1
Query:  358 VTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTV 507
            + A GRT P + TG      R         V G+ P Y+GR   +YSR V
Sbjct:  245 IAAHGRTCPEEKTGFAFVGCR---------VTGTGPLYVGRAMGQYSRIV 285          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.086e-16
Identity = 42/116 (36.21%), Postives = 56/116 (48.28%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARD-------ITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHA 328
            R  TI        D S+TF S    +V       +       +T  N        AVA+ V  D SAFYNCD L  QDT++ +  R  F NC I G +DFIFG+  +V ++C I+A
Sbjct:   46 RVTTITYNGHAATDVSSTFTSYPSHIVVRNLSIMNTYNRLTSLTKANGMSWDIKPAVAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINA 161          

HSP 2 Score: 37.3502 bits (85), Expect = 1.086e-16
Identity = 18/61 (29.51%), Postives = 32/61 (52.46%), Query Frame = 1
Query:  358 VTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 540
            +TAQGR+  +  +G V  +           V GS   YLGR +  +SR + +Q+ ++ ++H
Sbjct:  175 ITAQGRSSDSDPSGFVFLRGS---------VSGSTSVYLGRAYGPFSRVIFIQTDLSSVVH 226          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.829e-16
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 2
Query:   41 DGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI 322
            D ++  +S T A + +  + + ITF N+   PS  +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFI G+  ++ Q+C I
Sbjct:   95 DHASLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRVPAVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVI 197          

HSP 2 Score: 44.669 bits (104), Expect = 1.829e-16
Identity = 23/60 (38.33%), Postives = 31/60 (51.67%), Query Frame = 1
Query:  358 VTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            +TAQGRT+ N   G V             LV G    YLGR W+ YSR +   S++TD++
Sbjct:  212 ITAQGRTNANDANGFVFINC---------LVHGFGKAYLGRAWRPYSRVIFYNSNLTDVV 262          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.082e-16
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:   53 TFKSATVAVVGEGFLARDITFQNTAGP----SKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHA 328
            T +SAT+ V  E F A  +T +NTA      S+ QA+A+R+ AD +AFY+C    +QDTL       FF +C I GT DFIFG  A++  N  +HA
Sbjct:  140 TVESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHA 235          

HSP 2 Score: 27.7202 bits (60), Expect = 3.082e-16
Identity = 14/62 (22.58%), Postives = 26/62 (41.94%), Query Frame = 1
Query:  355 MVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 540
            ++TAQGR    +  G      ++  T            YLGR W  + + V   + +T +++
Sbjct:  242 VITAQGRQSATEQNGYTFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAFTEMTSVVN 295          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.140e-15
Identity = 42/111 (37.84%), Postives = 57/111 (51.35%), Query Frame = 2
Query:   11 TIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHA 328
            T I  +        T  S +  V    F A +I+F+N A     G +  QAVALR+  D +AFY C     QDTL     R FF  C I G++DFIFGN  ++ Q+C I++
Sbjct:  151 TSIEWNDTAKSAGNTADSFSFVVFAANFTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINS 261          

HSP 2 Score: 27.335 bits (59), Expect = 1.140e-15
Identity = 16/60 (26.67%), Postives = 26/60 (43.33%), Query Frame = 1
Query:  358 VTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            +TAQGR   ++ +G      +I          GS    LGR W  Y+  V   + ++ +I
Sbjct:  274 ITAQGRQSEDEQSGFSFVNCKI---------DGSGEILLGRAWGAYATVVFSNTYMSGII 324          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.654e-13
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 2
Query:   41 DGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR 331
            DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSR 217          

HSP 2 Score: 25.0238 bits (53), Expect = 1.654e-13
Identity = 17/40 (42.50%), Postives = 20/40 (50.00%), Query Frame = 1
Query:  376 TDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW 486
            T+ NQ  G+VI  SR+   SD      S P     LGRPW
Sbjct:  236 TNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPW 269          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.654e-13
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 2
Query:   41 DGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR 331
            DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSR 217          

HSP 2 Score: 25.0238 bits (53), Expect = 1.654e-13
Identity = 17/40 (42.50%), Postives = 20/40 (50.00%), Query Frame = 1
Query:  376 TDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW 486
            T+ NQ  G+VI  SR+   SD      S P     LGRPW
Sbjct:  236 TNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPW 269          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.153e-13
Identity = 36/115 (31.30%), Postives = 58/115 (50.43%), Query Frame = 2
Query:    8 RTIIT-GSRNVVDGSTTFKSATVAVVGEGFLARDITFQN------TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR 331
            +TII  G   + + S TF S    ++  G     ITF+N      ++ P+K    A+ +G D  A  +     +QDTLY    R ++  C+I+G +DFIFG A ++ + C +  R
Sbjct:  100 KTIIAYGDHQLTNTSATFTSYPSNIIITG-----ITFKNKYNIASSSSPTKPAVAAMMLG-DKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLR 208          

HSP 2 Score: 38.891 bits (89), Expect = 2.153e-13
Identity = 22/60 (36.67%), Postives = 27/60 (45.00%), Query Frame = 1
Query:  358 VTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            +TAQGR  P    G V +            V GS    LGR WK YSR +  +S  +D I
Sbjct:  221 ITAQGRDSPTDKGGFVFKDCT---------VMGSGKALLGRAWKSYSRVIFYRSMFSDNI 271          
The following BLAST results are available for this feature:
BLAST of CX307844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PME29_ARATH1.326e-1735.92Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME11_ARATH4.659e-1741.18Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME68_ARATH4.915e-1739.18Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME52_ARATH1.086e-1636.21Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME55_ARATH1.829e-1634.95Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME50_ARATH3.082e-1643.75Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME15_ARATH1.140e-1537.84Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH1.654e-1339.13Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD31.654e-1339.13Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME10_ARATH2.153e-1331.30Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC20002F06SK OF2 Citrus clementina cDNA clone C20002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307844 ID=CX307844; Name=CX307844; organism=Citrus clementina; type=EST; length=541bp
AAGGACTAGAACTATCATCACAGGAAGTAGAAATGTGGTTGATGGAAGCA
CAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATTCTTGGCC
CGAGACATTACATTCCAAAACACAGCAGGCCCCTCAAAGCACCAGGCAGT
GGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGCGATATGT
TAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGTTCTTTGTG
AACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAATGCTGCAGC
CGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTCCGGCCAAA
AAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAAACACCGGCA
TTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTAAAACTGGTT
CAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGAGTACTCGAG
GACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACC
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