CX307851

Overview
NameCX307851
Unique NameCX307851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length464
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.105e-45
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            RNE G+++YP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C Q +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TV+SPMK++ MTEP                VKI KAFGL VT
Sbjct:   55 RNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHLGVKIAKAFGLHVT 208          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.105e-45
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            RNE G+++YP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C Q +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TV+SPMK++ MTEP                VKI KAFGL VT
Sbjct:   55 RNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVT 208          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.688e-45
Identity = 85/154 (55.19%), Postives = 102/154 (66.23%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            +NEWG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  V SC+ C+SC +G ENYCP M++T N  D  G  T GG+SD++VV Q YV+R P ++P D  APLLCAG+TVYSPM  YG+  P                VK GKAFG+KVT
Sbjct:   53 KNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVT 206          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 6.123e-45
Identity = 86/157 (54.78%), Postives = 103/157 (65.61%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD---GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            +N+WG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  VASC+ CE C  G ENYC  M+ T N +D D   G  T GG+SD IVV++HYVLR P  +PLD+ APLLCAG+TVYSPM  +G+  P               AVK  KAFG++VT
Sbjct:  128 KNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVT 284          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.039e-44
Identity = 84/154 (54.55%), Postives = 101/154 (65.58%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            +NEWG   YP+VPGHEIVG V  VG  V++FK GD VGVG  V SC+ C+SC +G ENYCP M++T N  D  G  T GG+SD++VV Q YVLR P ++P D  APLLCAG+TVYSPM  YG+  P                VK GKAFG+KVT
Sbjct:   53 KNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVT 206          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.412e-41
Identity = 83/154 (53.90%), Postives = 99/154 (64.29%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            RN +  + YP+VPGHEI G VT+VG +V  FK GD VGVGV V SCQ CE+C   LEN+C   ++TYNS+D DGT T GGYS  I+V Q Y  + P + PL   APLLCAGITVY+PM  + M +P               AVK GKAFGLKVT
Sbjct:   55 RNMFNDSIYPLVPGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGTVTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVT 208          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.844e-41
Identity = 82/154 (53.25%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            RN    + YP+VPGHEI G VT+VG +V  FK GD VGVG  V SC+ CE+C   LENYC   + T+N +D DGT T GGYS  IVV + Y  + PD  PL+  APLLCAGITVYSPM  + M +P               AVK GKAFGLKVT
Sbjct:   55 RNILNNSMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVT 208          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.145e-41
Identity = 80/153 (52.29%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    7 EWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            EWG  NYP+VPGHEI G VT VG+ V+K+++GD+VGVG  V SC++C SC +G+E YC P    TYNSI +DG  T GGYS+ IVVD++YVLR PD +PLD  APLLCAGIT+YSP++++                     VK+G A G  VT
Sbjct:   51 EWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHWN-AGANTRVAIIGLGGLGHMGVKLGAAMGADVT 202          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.145e-41
Identity = 80/153 (52.29%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    7 EWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            EWG  NYP+VPGHEI G VT VG+ V+K+++GD+VGVG  V SC++C SC +G+E YC P    TYNSI +DG  T GGYS+ IVVD++YVLR PD +PLD  APLLCAGIT+YSP++++                     VK+G A G  VT
Sbjct:   51 EWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHWN-AGANTRVAIIGLGGLGHMGVKLGAAMGADVT 202          
BLAST of CX307851 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.477e-40
Identity = 80/154 (51.95%), Postives = 98/154 (63.64%), Query Frame = 1
Query:    1 RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXAVKIGKAFGLKVT 462
            RN+ G + YP+VPGHEI G VTKVG NV +FK GD VGVG  V SC++CE C +G E  C   + T+N ID DG+ T GGYS  IVV + Y  + P + PL++ APLLCAGITVY+PM  + M +P               AVK GKAFGL VT
Sbjct:   56 RNQHGDSKYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVT 209          
The following BLAST results are available for this feature:
BLAST of CX307851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
CADH_PINTA2.105e-4552.60Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA2.105e-4552.60Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CAD8D_ORYSJ4.688e-4555.19Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CAD8C_ORYSJ6.123e-4554.78Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8A_ORYSJ3.039e-4454.55Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH4_ORYSJ1.412e-4153.90Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH1_ORYSJ1.844e-4153.25Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
ADHC_MYCTU3.145e-4152.29NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO3.145e-4152.29NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH1_ARATH3.477e-4051.95Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20002G02SK OF2 Citrus clementina cDNA clone C20002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307851 ID=CX307851; Name=CX307851; organism=Citrus clementina; type=EST; length=464bp
AGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCATGAAAT
TGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAAAGAGG
GTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAATGTGAA
AGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTTACATA
TAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTCAGATC
TGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACATGCCT
CTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTACAGCCC
AATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGTAACAG
GACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCTTTGGG
TTGAAAGTCACCGT
back to top