CX307865

Overview
NameCX307865
Unique NameCX307865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.270e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  181 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            KRL  +   L      GIS  P++++I  W   I G  DT ++G  ++L+L F+ DYP K P V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL S
Sbjct:   39 KRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLS 140          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.270e-19
Identity = 39/102 (38.24%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  181 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            KR++++ ++L  DP  GI+  P D+++  +   I GP+ +P++ G F+L L   +DYP + P VRF+++++HPNI   G ICLD+L+  WSP   +  +L S
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLS 107          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.270e-19
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            +ST A KR+ ++   +  DPP   S  P+ ++I  W + I GP  + ++GG F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L S
Sbjct:   45 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLS 151          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.270e-19
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            +ST A KR+ ++   +  DPP   S  P+ ++I  W + I GP  + ++GG F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L S
Sbjct:   45 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLS 151          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.964e-19
Identity = 43/104 (41.35%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  175 ARKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAI 477
            +R RL +++K +Q++  A   I     D +I  W A+I GP +TP++GG F+L     E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++
Sbjct:    4 SRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSV 107          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  181 KRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            KRL  +   L      GIS  P  D++++ W   I GP DT ++G  FK+++ F  +YP  PPT+ F S M+HPN+   G+ICLDIL+++WS +Y+V  IL S
Sbjct:   31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLS 133          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  184 RLMRDFKRLQQDPPAGISGAPQDNS-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS 486
            RLM+++K LQ +    I   P+D S +  W A+I GP DTP++ G F+L +    +YP +PPT++FV+++FHPNI +  G ICLD+L+  WS IY + ++  S
Sbjct:    4 RLMKEYKVLQNEEFEDILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRS 106          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  181 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            KRL ++   L      GIS  P   +I  W   I GP +T + G T++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL S
Sbjct:   35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLS 136          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  181 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            KR+ ++   +  DPP   S  P+ +++  W + I GP  + ++GG F L + F+ +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L S
Sbjct:   89 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLS 190          
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  163 MSTPARKRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTS 486
            M++ A   L +  K L + P  G S G   + +I  W+  I GP DT ++GG F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ S
Sbjct:    1 MASQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLS 122          
The following BLAST results are available for this feature:
BLAST of CX307865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC19_ARATH2.270e-1944.12Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBC13_YEAST2.270e-1938.24Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UB2E1_MOUSE2.270e-1940.74Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN2.270e-1940.74Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC21_ARATH2.964e-1941.35Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC11_SCHPO5.056e-1942.72Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBCX_DICDI8.625e-1942.72Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBE2C_DROME1.126e-1842.16Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBCD2_DROME1.921e-1838.24Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC7_ARATH1.921e-1836.89Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC20002H09SK OF2 Citrus clementina cDNA clone C20002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307865 ID=CX307865; Name=CX307865; organism=Citrus clementina; type=EST; length=488bp
AACGACTCTCTCTCTCTTGTTTCTCTGATCAAATTGAGTACCATGGAATT
CTTTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCGAGAAAATCTCGCT
GCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGCTCG
TAGGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGATTT
TAAGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGG
ACAACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGATACC
CCATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGATTA
TCCAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTTCCATCCAA
ATATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAGTGG
AGTCCAATTTACGATGTAGCAGCAATACTCACGTCAAT
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