CX307866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12 Identity = 49/161 (30.43%), Postives = 74/161 (45.96%), Query Frame = 1 Query: 76 EACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLIS-DAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLG-------HHTEPNDV 534 EA E Q G HS VTS G +++FG+ G+LG G T + P + +L T+ +S D V+AFG +G+ G K +SPQ ++ L I + + A G F+ L+++G VYTF G D +G +H P + Sbjct: 4129 EALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAK--SSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTF--GQDRLIGLPEGRARNHNRPQQI 4285 HSP 2 Score: 68.5514 bits (166), Expect = 2.239e-11 Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 100 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR-VYTFSWGNDARLGH 513 S + GH++A T++G V+S+G G+LGHG + + P+ I+ L + +++ G++Y +G+ FG +G ++ + P LV+ + N V + + G+ T LS++GR V++F G++ +LGH Sbjct: 461 SSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNI--PTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGH 596 HSP 3 Score: 67.0106 bits (162), Expect = 6.516e-11 Identity = 39/131 (29.77%), Postives = 66/131 (50.38%), Query Frame = 1 Query: 121 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG-RVYTFSWGNDARLG 510 GHS+A+T G V+S+G G+LGHG ++ + RPR I +L + +++ G+++ FG +G G K + P+ V +L+ + Q A G T +S +G V+ F G+ +LG Sbjct: 4092 GHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKL--PERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLG 4220
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_RAT (RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11 Identity = 44/147 (29.93%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540 + G HS+ +TS G V+++G N+SGQ+G G+T + PR + L +M + D G+VY +G + G+ G G + +P V +L+ I V + A G T VL+ EG++Y + + +LG + N P Sbjct: 156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_MOUSE (RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11 Identity = 44/147 (29.93%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540 + G HS+ +TS G V+++G N+SGQ+G G+T + PR + L +M + D G+VY +G + G+ G G + +P V +L+ I V + A G T VL+ EG++Y + + +LG + N P Sbjct: 156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_PONAB (RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11 Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 1 Query: 103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540 + G HS+ +TS G V+++G N+SGQ+G G+T + PR + L M + D G+VY +G + G+ G G + +P V +L+ I V + A G T VL+ EG+VY + + +LG + N P Sbjct: 156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_HUMAN (RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11 Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 1 Query: 103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540 + G HS+ +TS G V+++G N+SGQ+G G+T + PR + L M + D G+VY +G + G+ G G + +P V +L+ I V + A G T VL+ EG+VY + + +LG + N P Sbjct: 156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11 Identity = 44/148 (29.73%), Postives = 73/148 (49.32%), Query Frame = 1 Query: 103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-EEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTS-PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540 Q G HS+A++ V+S+G NS GQLG G + P+ +RSL + +S G + +G +S G+ + + ++ P V +LKN+ VV + G+ TAVL+++G+V+TF +LG+ P P Sbjct: 132 QVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGP 279
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11 Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 1 Query: 115 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWR-PRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540 G HS+A++ +G ++S+G+ S GQLG TTE+ PR I+ L + ++ GQ + +GK+S G+ G + SPQ V SL+ I + Q A G + LS G V+ + N +LG E + P Sbjct: 92 GESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPS-QASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESP 233 HSP 2 Score: 67.0106 bits (162), Expect = 6.516e-11 Identity = 45/147 (30.61%), Postives = 74/147 (50.34%), Query Frame = 1 Query: 103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-EEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540 Q G H +A+ + G +++G NS GQLG G + P+ +RSL + +S +G V+ +G ++ G+ G+ K SP V+ L+ VV + G TAVL++ G V+TF G+ +LGH + ++V P Sbjct: 141 QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQL--GLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNP 285
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCC2_XENLA (Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11 Identity = 37/133 (27.82%), Postives = 70/133 (52.63%), Query Frame = 1 Query: 124 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTE 522 HS+ +T +G ++S+G N GQLGHG + P+ I SL T+ +++ G VYAFG++ G+ G + + + Q++ + + I + A G F+ ++ +G +Y+F +LGH+++ Sbjct: 152 HSLLITVEGKLWSWGRNDKGQLGHGDIKRIDVPKLIESLKGEVFVHAACGRNHTLALTENGSVYAFGENKMGQLGLGNKTDAVPSPAQILYNGQPI--TKVACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSD 282 The following BLAST results are available for this feature:
BLAST of CX307866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307866 ID=CX307866; Name=CX307866; organism=Citrus clementina; type=EST; length=540bpback to top |