CX307866

Overview
NameCX307866
Unique NameCX307866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 49/161 (30.43%), Postives = 74/161 (45.96%), Query Frame = 1
Query:   76 EACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLIS-DAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLG-------HHTEPNDV 534
            EA    E  Q   G  HS  VTS G +++FG+   G+LG G T  +  P  + +L              T+ +S D   V+AFG   +G+   G    K  +SPQ ++ L  I + + A G  F+  L+++G VYTF  G D  +G       +H  P  +
Sbjct: 4129 EALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAK--SSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTF--GQDRLIGLPEGRARNHNRPQQI 4285          

HSP 2 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  100 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR-VYTFSWGNDARLGH 513
            S +    GH++A T++G V+S+G    G+LGHG +  +  P+ I+  L              +  +++ G++Y +G+  FG   +G   ++ +  P LV+ + N  V + + G+  T  LS++GR V++F  G++ +LGH
Sbjct:  461 SSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNI--PTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGH 596          

HSP 3 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 39/131 (29.77%), Postives = 66/131 (50.38%), Query Frame = 1
Query:  121 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG-RVYTFSWGNDARLG 510
            GHS+A+T  G V+S+G    G+LGHG ++ + RPR I +L              + +++  G+++ FG   +G    G    K +  P+ V +L+   + Q A G   T  +S +G  V+ F  G+  +LG
Sbjct: 4092 GHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKL--PERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLG 4220          
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_RAT (RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 44/147 (29.93%), Postives = 73/147 (49.66%), Query Frame = 1
Query:  103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540
            +   G  HS+ +TS G V+++G N+SGQ+G G+T  +  PR +   L              +M + D G+VY +G +  G+   G  G +   +P  V +L+ I V + A G   T VL+ EG++Y +   +  +LG   + N   P
Sbjct:  156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300          
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_MOUSE (RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 44/147 (29.93%), Postives = 73/147 (49.66%), Query Frame = 1
Query:  103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540
            +   G  HS+ +TS G V+++G N+SGQ+G G+T  +  PR +   L              +M + D G+VY +G +  G+   G  G +   +P  V +L+ I V + A G   T VL+ EG++Y +   +  +LG   + N   P
Sbjct:  156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300          
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_PONAB (RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540
            +   G  HS+ +TS G V+++G N+SGQ+G G+T  +  PR +   L               M + D G+VY +G +  G+   G  G +   +P  V +L+ I V + A G   T VL+ EG+VY +   +  +LG   + N   P
Sbjct:  156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300          
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCBT2_HUMAN (RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540
            +   G  HS+ +TS G V+++G N+SGQ+G G+T  +  PR +   L               M + D G+VY +G +  G+   G  G +   +P  V +L+ I V + A G   T VL+ EG+VY +   +  +LG   + N   P
Sbjct:  156 EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQ--PTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP 300          
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 44/148 (29.73%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-EEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTS-PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540
            Q   G  HS+A++    V+S+G NS GQLG G     +  P+ +RSL              +  +S  G  + +G +S G+     +   + ++ P  V +LKN+ VV  + G+  TAVL+++G+V+TF      +LG+   P    P
Sbjct:  132 QVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGP 279          
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  115 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWR-PRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540
            G  HS+A++ +G ++S+G+ S GQLG  TTE+    PR I+ L               + ++  GQ + +GK+S G+   G +      SPQ V SL+ I + Q A G   +  LS  G V+ +   N  +LG   E +   P
Sbjct:   92 GESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPS-QASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESP 233          

HSP 2 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 45/147 (30.61%), Postives = 74/147 (50.34%), Query Frame = 1
Query:  103 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-EEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 540
            Q   G  H +A+ + G  +++G NS GQLG G     +  P+ +RSL              +  +S +G V+ +G ++ G+   G+   K   SP  V+ L+   VV  + G   TAVL++ G V+TF  G+  +LGH +  ++V P
Sbjct:  141 QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQL--GLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNP 285          
BLAST of CX307866 vs. ExPASy Swiss-Prot
Match: RCC2_XENLA (Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 37/133 (27.82%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  124 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTE 522
            HS+ +T +G ++S+G N  GQLGHG  +    P+ I SL              T+ +++ G VYAFG++  G+   G +   + +  Q++ + + I   + A G  F+ ++  +G +Y+F      +LGH+++
Sbjct:  152 HSLLITVEGKLWSWGRNDKGQLGHGDIKRIDVPKLIESLKGEVFVHAACGRNHTLALTENGSVYAFGENKMGQLGLGNKTDAVPSPAQILYNGQPI--TKVACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSD 282          
The following BLAST results are available for this feature:
BLAST of CX307866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
HERC1_HUMAN7.697e-1230.43Probable E3 ubiquitin-protein ligase HERC1 OS=Homo... [more]
RCBT2_RAT1.715e-1129.93RCC1 and BTB domain-containing protein 2 OS=Rattus... [more]
RCBT2_MOUSE1.715e-1129.93RCC1 and BTB domain-containing protein 2 OS=Mus mu... [more]
RCBT2_PONAB3.820e-1130.61RCC1 and BTB domain-containing protein 2 OS=Pongo ... [more]
RCBT2_HUMAN3.820e-1130.61RCC1 and BTB domain-containing protein 2 OS=Homo s... [more]
HERC6_HUMAN4.989e-1129.73Probable E3 ubiquitin-protein ligase HERC6 OS=Homo... [more]
HERC3_HUMAN4.989e-1131.47Probable E3 ubiquitin-protein ligase HERC3 OS=Homo... [more]
RCC2_XENLA8.510e-1127.82Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC20002H11SK OF2 Citrus clementina cDNA clone C20002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307866 ID=CX307866; Name=CX307866; organism=Citrus clementina; type=EST; length=540bp
GAAGCAGAACGTCAAGATTTGAAGCAAAAATGCGGGGGTTCTTGGAAACT
GGTGCTGAGGTTTTTGCTGGCTGGAGAAGCATGTTGCAGGAGGGAGAATT
CCCAGGCGATAGCTGGGCCTGGTCATAGTATTGCTGTGACATCAAAGGGA
GTAGTTTATTCATTTGGCTCTAACAGCTCTGGGCAGCTTGGACATGGCAC
CACTGAAGAAGAATGGCGACCCCGGCCTATCAGATCTCTGCAAGGCATTC
GAATCATCCAAGCAGCTGCTGGTGCTGGCCGGACAATGCTGATTAGTGAT
GCTGGGCAAGTTTATGCCTTCGGCAAGGACTCCTTTGGTGAAGCAGAGTA
CGGGGTCCAAGGAACTAAGCTGGTCACAAGCCCACAGCTGGTTGAGTCTT
TGAAAAATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTTACAGCT
GTACTGTCAAGGGAAGGCAGGGTTTATACCTTTTCTTGGGGAAATGATGC
GAGACTGGGTCACCATACTGAGCCTAATGACGTGGAGCCT
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