CX307906

Overview
NameCX307906
Unique NameCX307906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_ENCCU (Probable aspartyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0790 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.777e-28
Identity = 63/133 (47.37%), Postives = 88/133 (66.17%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            +D+R    +  FR+   V   FR +L    F+EI T KLI  SSEGG+ +F +DY  + A +AQSPQL+KQM+I G F RV+E G V+RAE+S  +R+L EF GLD+EMEI   Y++V+  +  + V+IFD L
Sbjct:  158 MDLRAPQTRATFRVVDGVMFFFRTYLRQNGFMEIKTSKLIGSSSEGGANLFSVDYFKRKAFMAQSPQLYKQMAIVGGFKRVYEIGHVYRAEESNINRYLSEFVGLDMEMEICTDYNDVIRFIHSMLVSIFDNL 290          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_ARCFU (Aspartyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=aspS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.857e-26
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 394
            +D+R    Q IFRI+ QV    R+FL  E F+E+HTPK+++ ++EGG+ +F + Y  + A L QSPQL+KQ+ +   F +VFE GP+FRAE+  T RHL E   +D+EM    H + VMD+++RL   +++
Sbjct:  124 MDLRRPRVQAIFRIRHQVMQSVREFLSEEGFIEVHTPKIVSTATEGGTELFPISYFEKEAFLNQSPQLYKQVLMAAGFEKVFEIGPIFRAEEHNTTRHLNEAISIDIEMSFTDH-NGVMDVLERLVQRVYE 253          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_PYRHO (Aspartyl-tRNA synthetase OS=Pyrococcus horikoshii GN=aspS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.284e-26
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRL 376
            +D+R      IF+I+S V    R+F  SE F+EIHTPK+IA ++EGG+ +F L Y  + A LAQSPQL+KQM +     +VFE  P+FRAE+  T RHL E   +D EM   ++  EVMD+++RL
Sbjct:  126 MDLRNPKVMAIFKIRSSVFRAVREFFYSEGFIEIHTPKIIATATEGGTELFPLKYFERDAFLAQSPQLYKQMMMATGLDKVFEIAPIFRAEEHNTTRHLNEAWSIDAEMAFIENEGEVMDLLERL 250          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_PYRAB (Aspartyl-tRNA synthetase OS=Pyrococcus abyssi GN=aspS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.284e-26
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 394
            +D+R      IF+I+S V    R+F   E F+EIHTPK+IA ++EGG+ +F L Y    A LAQSPQL+KQM +     +VFE GP+FRAE+  T RHL E   +D EM   +   EVMD+++RL + + +
Sbjct:  126 MDLRNPRVMSIFKIRSSVFRATREFFYKEGFIEIHTPKIIATATEGGTELFPLKYFENDAFLAQSPQLYKQMMMSTGLDKVFEIGPIFRAEEHNTTRHLNEAWSIDAEMAFIESEEEVMDLLERLILYVIN 256          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_METKA (Aspartyl-tRNA synthetase OS=Methanopyrus kandleri GN=aspS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.284e-26
Identity = 56/130 (43.08%), Postives = 84/130 (64.62%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 391
            +D+R    Q IF+I++ V    R+FL    F+E+HTPK+IA ++EGG+ +F + Y  + A LAQSPQL+KQM +   F RV+E GP+FRAE+  T RHL E   +D+EM   +   +VM +++ L   +F
Sbjct:  126 LDLRREEPQAIFKIRNVVTTAIREFLEERGFIEVHTPKIIASATEGGTELFPVVYFERDAYLAQSPQLYKQMLMAAGFERVYEIGPIFRAEEHNTRRHLNEAISVDIEMSFIESEEDVMRVLEELLAHVF 255          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_ENTBH (Probable aspartyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_21705 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.284e-26
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN 406
            +D R    Q I +I  Q    FR +L +  F+EI T K+I   SEGG+ +F L+Y  + A LAQSPQL+KQ++I G   RV+E G V+RAE S  +R+L EF GLD+EME++  Y + +  +  LF+ IF+   N
Sbjct:  159 LDFRLPVTQSIIKIIDQTMYTFRTYLRTHEFIEIKTSKIIQSGSEGGANLFSLNYFNKPAYLAQSPQLYKQLAIIGGLKRVYEIGHVYRAEVSNINRYLSEFVGLDIEMEMETTYIDFIHFLHSLFINIFESFKN 293          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_PYRFU (Aspartyl-tRNA synthetase OS=Pyrococcus furiosus GN=aspS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.148e-25
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 382
            ID+R      IF+I+S V    R+F  +E F+EIHTPK+IA ++EGG+ +F + Y    A LAQSPQL+KQ+ +     +VFET P+FRAE+  T RHL E   +D E+   ++  EVMD+++ L V
Sbjct:  126 IDLRNPKVMAIFKIRSNVFRAIREFFYNEGFIEIHTPKIIATATEGGTELFPIKYFENDAFLAQSPQLYKQIMMATGLDKVFETAPIFRAEEHNTTRHLNEAWSIDAEIAFIENEEEVMDVLENLVV 252          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_AERPE (Aspartyl-tRNA synthetase OS=Aeropyrum pernix GN=aspS PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.196e-24
Identity = 54/123 (43.90%), Postives = 80/123 (65.04%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD 370
            +DIR      IF +++ V  +FR +  S+ FVEI TPK++A  +E G+ VF + Y  ++A LAQSPQ +KQ ++     RVFE GPVFRAE  +T RHL E+  LD+E+   + Y++VM+ V+
Sbjct:  128 LDIRNPMVSAIFELEAMVAKVFRDYYWSQGFVEIFTPKIVAAGTESGAEVFPVVYFDKTAFLAQSPQFYKQFAVIAGLERVFEIGPVFRAEPHHTSRHLNEYHSLDIEVGFIESYNDVMNYVE 250          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_METBF (Aspartyl-tRNA synthetase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=aspS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.481e-24
Identity = 54/130 (41.54%), Postives = 83/130 (63.85%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 391
            ID+R      +F+I+ Q     R++ +   F+E  TPK++A ++EGG+A+F + Y  + A L QSPQL KQ+ + G F RVFE GP+FRAE+  T RHL E T +DVE+    H+ +VM+I++ L   ++
Sbjct:  132 IDLRRAETTAVFKIRHQALQATREYFVQNGFIETATPKVVATATEGGTALFPITYFDREAFLNQSPQLFKQILMSGGFDRVFEIGPIFRAEEHDTRRHLNEATSIDVEVSFADHF-DVMEILENLVAYVY 260          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_METMA (Aspartyl-tRNA synthetase OS=Methanosarcina mazei GN=aspS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.546e-24
Identity = 53/130 (40.77%), Postives = 84/130 (64.62%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 391
            ID+R      +F+I+ +     R++ +  NF+E  TPK++A ++EGG+A+F + Y  + A L QSPQL KQ+ + G F RVFE GP+FRAE+  T RHL E T +DVE+    H+ +VM++++ L   ++
Sbjct:  132 IDLRRAETTAVFKIRHESLRAIREYFVKYNFIETATPKVVATATEGGTALFPITYFDREAFLNQSPQLFKQILMSGGFDRVFEIGPIFRAEEHDTRRHLNEATSIDVEVSFADHF-DVMELLENLVAYVY 260          
The following BLAST results are available for this feature:
BLAST of CX307906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYDC_ENCCU6.777e-2847.37Probable aspartyl-tRNA synthetase, cytoplasmic OS=... [more]
SYD_ARCFU4.857e-2643.51Aspartyl-tRNA synthetase OS=Archaeoglobus fulgidus... [more]
SYD_PYRHO8.284e-2647.20Aspartyl-tRNA synthetase OS=Pyrococcus horikoshii ... [more]
SYD_PYRAB8.284e-2645.04Aspartyl-tRNA synthetase OS=Pyrococcus abyssi GN=a... [more]
SYD_METKA8.284e-2643.08Aspartyl-tRNA synthetase OS=Methanopyrus kandleri ... [more]
SYDC_ENTBH8.284e-2643.70Probable aspartyl-tRNA synthetase, cytoplasmic OS=... [more]
SYD_PYRFU3.148e-2544.88Aspartyl-tRNA synthetase OS=Pyrococcus furiosus GN... [more]
SYD_AERPE1.196e-2443.90Aspartyl-tRNA synthetase OS=Aeropyrum pernix GN=as... [more]
SYD_METBF3.481e-2441.54Aspartyl-tRNA synthetase OS=Methanosarcina barkeri... [more]
SYD_METMA4.546e-2440.77Aspartyl-tRNA synthetase OS=Methanosarcina mazei G... [more]

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Properties
Property NameValue
Genbank descriptionC20003E01SK OF2 Citrus clementina cDNA clone C20003E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307906 ID=CX307906; Name=CX307906; organism=Citrus clementina; type=EST; length=409bp
TATTGACATACGAACACTGGCTAACCAGGGGATTTTTCGCATTCAGAGTC
AAGTTGGGAATATATTCAGACAATTCTTGTTATCTGAGAATTTTGTTGAG
ATCCACACGCCAAAACTGATAGCTGGCTCAAGTGAAGGTGGTTCTGCTGT
TTTTAGGTTGGACTACAAAGGCCAGTCAGCGTGCCTGGCCCAGTCTCCTC
AGCTTCACAAGCAAATGTCAATATGTGGTGATTTTGGGCGGGTTTTTGAG
ACTGGTCCTGTTTTCAGAGCAGAGGACTCGTACACTCATAGGCATTTGTG
TGAGTTTACTGGTCTTGATGTCGAAATGGAGATTAAGAAGCATTATTCCG
AGGTAATGGATATTGTGGACCGCTTATTTGTCACAATTTTTGACGGCTTG
AATAATGTG
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