CX307906

Overview
NameCX307906
Unique NameCX307906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_CLOB6 (Aspartyl-tRNA synthetase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=aspS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 42/132 (31.82%), Postives = 68/132 (51.52%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 391
            +D+R    Q IF I+ +   + R FL    F+E+ TP L   + EG     V   +YKG    L QSPQ+ KQ+ +   + + F+    FR ED   +R   EFT +D+E+   +   +V+D+ ++L   +F
Sbjct:  136 LDLRRPDMQKIFMIRHKTCKVVRDFLDENGFLEMETPILTKSTPEGARDYLVPSRNYKGMFYALPQSPQIFKQLLMVSGYDKYFQITKCFRDEDLRANRQ-PEFTQIDMELSFVEE-DDVIDLNEKLLAKVF 265          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_CLOB1 (Aspartyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=aspS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 42/138 (30.43%), Postives = 70/138 (50.72%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 409
            +D+R    Q IF I+ +   + R FL    F+E+ TP L   + EG     V   +YKG    L QSPQ+ KQ+ +   + + F+    FR ED   +R   EFT +D+E+   +   +V+++ +RL   +F  +  +
Sbjct:  136 LDLRRPDMQKIFMIRHKTCKVVRDFLDENGFLEMETPILTKSTPEGARDYLVPSRNYKGMFYALPQSPQIFKQLLMVSGYDKYFQITKCFRDEDLRANRQ-PEFTQIDMELSFVEE-DDVIELNERLLAKVFKEVGGI 271          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_BORGA (Aspartyl-tRNA synthetase OS=Borrelia garinii GN=aspS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 2
Query:    2 IDIR--TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 409
            +D+R  +L N+ I R Q+   ++ R FL+ + F+E+ TP  +  + EG     +    +KG    L QSPQL+KQ+ +   F + F+    +R EDS   R   EFT LD+EM   K    +  +++ +   IF    N+
Sbjct:  128 LDLRRDSLKNKIILRCQAT--HLIRNFLVKKKFLELETPTFVKSTPEGARDFVIPSRIHKGSFYALPQSPQLYKQLIMIAGFDKYFQIARCYRDEDSRGDRQ-PEFTQLDLEMSFVKK-ENIFKLIENMLFLIFKNCLNI 263          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_BORBZ (Aspartyl-tRNA synthetase OS=Borrelia burgdorferi (strain ZS7) GN=aspS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 2
Query:    2 IDIR--TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 409
            +D+R  +L N+ I R Q+   ++ R FL+   F+E+ TP  +  + EG     +    +KG    L QSPQL+KQ+ +   F + F+    +R EDS   R   EFT LD+EM   K    +  +++ +   IF    N+
Sbjct:  128 LDLRRDSLKNKIILRCQAT--HLIRNFLIKRKFLELETPTFVKSTPEGARDFVIPSRIHKGSFYALPQSPQLYKQLIMIAGFDKYFQIARCYRDEDSRGDRQ-PEFTQLDLEMSFVKK-ENIFKLIENMLFLIFKNCINI 263          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_BORBU (Aspartyl-tRNA synthetase OS=Borrelia burgdorferi GN=aspS PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 2
Query:    2 IDIR--TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 409
            +D+R  +L N+ I R Q+   ++ R FL+   F+E+ TP  +  + EG     +    +KG    L QSPQL+KQ+ +   F + F+    +R EDS   R   EFT LD+EM   K    +  +++ +   IF    N+
Sbjct:  128 LDLRRDSLKNKIILRCQAT--HLIRNFLIKRKFLELETPTFVKSTPEGARDFVIPSRIHKGSFYALPQSPQLYKQLIMIAGFDKYFQIARCYRDEDSRGDRQ-PEFTQLDLEMSFVKK-ENIFKLIENMLFLIFKNCINI 263          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYD_BACCN (Aspartyl-tRNA synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=aspS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 42/138 (30.43%), Postives = 67/138 (48.55%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 409
            +D+R       F+++  V    R FL +E F+E+ TP L   + EG     V    + G+   L QSPQL KQ+ + G F R ++    FR ED    R   EFT +D+E        E++D+++R+   +   +  V
Sbjct:  132 LDLRRPVMYNTFKMRHDVTKTIRNFLDTEEFLEVETPILTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMVGGFERYYQVARCFRDEDLRADRQ-PEFTQIDIEASFLTQ-EEILDMMERMMTKVMKDVKGV 267          
The following BLAST results are available for this feature:
BLAST of CX307906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYD_CLOB69.832e-1131.82Aspartyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYD_CLOB19.832e-1130.43Aspartyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYD_BORGA9.832e-1131.43Aspartyl-tRNA synthetase OS=Borrelia garinii GN=as... [more]
SYD_BORBZ9.832e-1131.43Aspartyl-tRNA synthetase OS=Borrelia burgdorferi (... [more]
SYD_BORBU9.832e-1131.43Aspartyl-tRNA synthetase OS=Borrelia burgdorferi G... [more]
SYD_BACCN9.832e-1130.43Aspartyl-tRNA synthetase OS=Bacillus cereus subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC20003E01SK OF2 Citrus clementina cDNA clone C20003E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307906 ID=CX307906; Name=CX307906; organism=Citrus clementina; type=EST; length=409bp
TATTGACATACGAACACTGGCTAACCAGGGGATTTTTCGCATTCAGAGTC
AAGTTGGGAATATATTCAGACAATTCTTGTTATCTGAGAATTTTGTTGAG
ATCCACACGCCAAAACTGATAGCTGGCTCAAGTGAAGGTGGTTCTGCTGT
TTTTAGGTTGGACTACAAAGGCCAGTCAGCGTGCCTGGCCCAGTCTCCTC
AGCTTCACAAGCAAATGTCAATATGTGGTGATTTTGGGCGGGTTTTTGAG
ACTGGTCCTGTTTTCAGAGCAGAGGACTCGTACACTCATAGGCATTTGTG
TGAGTTTACTGGTCTTGATGTCGAAATGGAGATTAAGAAGCATTATTCCG
AGGTAATGGATATTGTGGACCGCTTATTTGTCACAATTTTTGACGGCTTG
AATAATGTG
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